TCONS_00047744-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047744-protein
Unique Name	TCONS_00047744-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	644

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047744-protein ID=TCONS_00047744-protein|Name=TCONS_00047744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=644bp
LIVSSLKRVTSATQSIFHCPCFYHLKLMNERDSISASRLQLSSTLLLFIL
SVKHSLHIFKTMSHSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDD
RALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLK
SEEAATNPSASTSVTPQQQQQTEDGKKGPNEDKVKQLLNRTGYTLDITTG
QRKYGGPPPGWEGPAPGTGEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQ
IYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVC
LSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRG
FAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSK
VKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMR
AIEELDNQELDDLKISVQLAKPQVDKTGQRRGQSGFGALNKKGESDNFVP
RGRGGFSGRGAGGPRGRGRGGFGGGFSHGGNYSQGGYRGGTYGQQRGGMN
RGRGGFGRGGSDYGSGRGGSRGGTGGYGSRGRGAGAPKRKADYGGDYGTP
SKRKNEWNSQPIAQQPLGNSSSNYYNDDYSGGDWYTDLSEPRWQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030403	XLOC_030403	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047744	TCONS_00047744	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR006535	HnRNP_R/Q_splicing_fac

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 307..385 e-value: 6.1E-10 score: 49.0 coord: 403..468 e-value: 1.2E-18 score: 78.0 coord: 226..300 e-value: 1.9E-18 score: 77.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 227..293 e-value: 2.2E-15 score: 56.1 coord: 308..372 e-value: 3.9E-8 score: 32.9 coord: 404..465 e-value: 2.2E-14 score: 52.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 225..304 score: 17.643
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 402..472 score: 17.063
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 306..389 score: 12.901
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 392..495
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 226..371
None	No IPR available	GENE3D	3.30.70.330		coord: 304..391 e-value: 2.3E-11 score: 43.2 coord: 130..303 e-value: 1.3E-20 score: 73.2
None	No IPR available	GENE3D	3.30.70.330		coord: 392..478 e-value: 2.4E-21 score: 75.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 474..644
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..183
None	No IPR available	CDD	cd12250	RRM2_hnRNPR_like	coord: 305..387 e-value: 1.6452E-38 score: 135.867
None	No IPR available	CDD	cd12249	RRM1_hnRNPR_like	coord: 224..302 e-value: 6.86706E-36 score: 128.831
None	No IPR available	CDD	cd12251	RRM3_hnRNPR_like	coord: 401..472 e-value: 5.61965E-30 score: 112.333
IPR006535	HnRNP R/Q splicing factor	TIGRFAM	TIGR01648	TIGR01648	coord: 168..488 e-value: 3.6E-124 score: 413.6

Blast

[Close]

BLAST of TCONS_00047744-protein vs. Swiss-Prot (Human)
Match: HNRPQ (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 458.373 bits (1178), Expect = 3.251e-154
Identity = 227/422 (53.79%), Postives = 300/422 (71.09%), Query Frame = 0

Query:   64 HSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDDRALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLKSEEAATNPSASTSVTPQQQQQTEDGKKGPNEDKVKQLLNRTGYTLDITTGQRKYGGPPPG--WEGPAPGTGEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQIYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVCLSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRGFAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSKVKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMRAIEELDNQELDDLKISVQLAKPQVDKTGQRRGQ 483
            HS  +  LL  G+   +A KLDEI+  GL+   +LD+RA+EALKEF E+ AL VL QF  SDL+HVQNKSAFLCGVMKTYR + K                   Q  +  D  KGP+E K+K LL RTGYTLD+TTGQRKYGGPPP   + G  P  G     +++F+GKIPRD++EDELVPLFE  G I+DLR+M+DP +GLN+GYAFVT+ TKE AQ +VK   NHE+R GK +GVC+S ANNRLFVGSIPK+KTK+ I+EEF    E LTDVI+Y   +DK KNRGF FL++  HK AAQARR+L SG++KV+G++   V+WAD +++P+ EVM+KVKV++VR+L+  + E  L + F Q+G +E+VKK+KDYAFI+F  RD A++A+EE++ ++L+   I +  AKP   K  +R+ Q
Sbjct:   23 HSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREK-------------------QGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVG-----TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQ 419

The following BLAST results are available for this feature:

BLAST of TCONS_00047744-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047744-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HNRPQ	3.251e-154	53.79	Heterogeneous nuclear ribonucleoprotein Q OS=Homo ...	[more]

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TCONS_00047744-protein (polypeptide) - C. hemisphaerica