TCONS_00047376-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047376-protein
Unique NameTCONS_00047376-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047376-protein ID=TCONS_00047376-protein|Name=TCONS_00047376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
MGDNNQRSPEDLGEIISFLLVSGQVRLVRSSGIGAFEVDMPAFGFGGDSS
DDETGHLNTAPLSPRGDTAPDTSNIEKSRLKNILLNETGYNYQYPKNITN
RILKRQHGALLGRDSFNSADRLQIYSKFLPNKCDIVEKFRSKVFCGTYSN
DGSVFMSACQDQHIRLYDTTNDNFKLFRDIKAKDVGWSVVDTAYSPDQNY
IIYSSWSEFIHLCNVYGDHETHLALDLRPDTTQFCAFSVSFSHDSKEIVA
GGSDCGLYIYERGCDQRILKITAHEEDVNSVAFADDSSNILISGSDDGLC
KVWDRRALNEQTPEPVGIFAGHVNGITYVSSKNDGVHFISNSKDQSIKLW
DIRHFSSEETVREARSIVANQSWDYRWPAAPRRSQRLKKSPGKDAVMTYR
GHRVLHTLLRAKFSPIFTTGQKYIYAGCASGNVVIYDVLTGEIVEKLKGV
HNQCVRDVSWHPYQNTIMSSSWDFSIGRWDFHRTDVQEQKDNDDEESTTL
PKSKRRRQFSASAVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030184XLOC_030184Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047376TCONS_00047376Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR0110426-blade_b-propeller_TolB-like
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 130..168
e-value: 0.21
score: 20.7
coord: 173..214
e-value: 97.0
score: 4.5
coord: 312..351
e-value: 1.9E-4
score: 30.8
coord: 392..437
e-value: 17.0
score: 9.2
coord: 440..480
e-value: 0.0018
score: 27.6
coord: 264..304
e-value: 3.2E-8
score: 43.3
coord: 226..261
e-value: 5.4
score: 12.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 314..351
e-value: 0.001
score: 19.8
coord: 450..480
e-value: 0.034
score: 14.9
coord: 270..304
e-value: 7.9E-6
score: 26.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 271..304
score: 13.55
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 319..360
score: 12.58
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 448..489
score: 8.938
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 248..299
e-value: 4.4E-13
score: 48.5
NoneNo IPR availableGENE3D1.10.10.670coord: 300..375
e-value: 4.6E-14
score: 51.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 487..515
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..73
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 115..247
e-value: 2.4E-13
score: 49.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 376..505
e-value: 9.8E-15
score: 53.8
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 417..489
score: 9.309
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 136..360
score: 22.096
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 135..352
coord: 391..480

Blast
[Close]
BLAST of TCONS_00047376-protein vs. Swiss-Prot (Human)
Match: DCA11 (DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1)

HSP 1 Score: 481.485 bits (1238), Expect = 2.739e-166
Identity = 227/494 (45.95%), Postives = 323/494 (65.38%), Query Frame = 0 
Query:   11 DLGEIISFLLVSGQVRLVRSSGIGAFEVDMPAFGFGGDSSDDETGHLNTAPLSPRGDTAPDTSNIEKSRLKN---ILLNETGYNYQYPKNITNRILKRQHGALLGRDSFNSADRLQIYSKFLPNKCDIVEKFRSKVFCGTYSNDGSVFMSACQDQHIRLYDTTNDNFKLFRDIKAKDVGWSVVDTAYSPDQNYIIYSSWSEFIHLCNVYGDHETHLALDLRPDTTQFCAFSVSFSHDSKEIVAGGSDCGLYIYERGCDQRILKITAHEEDVNSVAFADDSSNILISGSDDGLCKVWDRRALNEQTPEPVGIFAGHVNGITYVSSKNDGVHFISNSKDQSIKLWDIRHFSSEETVREARSIVANQSWDYRWPAAPRRSQRLKKSPGKDAVMTYRGHRVLHTLLRAKFSPIFTTGQKYIYAGCASGNVVIYDVLTGEIVEKLKGVHNQCVRDVSWHPYQNTIMSSSWDFSIGRWDFHRTDVQEQKDNDDEESTTLP 501
            DL +++++LL  GQVRLV+  G    +          ++     G L     +P  D  PDT  +E + +K    +   + G      K+   R+L ++   L  R SF+  ++ ++ S FLPN     + +  K FCG YS DG +FMSACQDQ IRLYD     F+ F+ IKA+DVGWSV+D A++PD N+ +YSSWS++IH+CN+YG+ +TH ALDLRPD  +F  FS++ S D +E++ G +D  LY+++R  ++R L+I +HE+DVN+VAFAD SS IL SG DD +CKVWDRR + E  P+PVG  AGH +GIT++ SK D  + ISNSKDQ+IKLWDIR FSS E +  +R     Q+WDYRW   P+++ R  K PG  ++MTYRGH VLHTL+R +FSPI +TGQ++IY+GC++G VV+YD+L+G IV+KL   H  CVRDVSWHP++  I+SSSWD ++  W + + +  +    + EE  + P
Sbjct:   41 DLAQVLAYLLRRGQVRLVQGGGAANLQFIQALLDSEEENDRAWDGRLGDR-YNPPVDATPDTRELEFNEIKTQVELATGQLGLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTN-HKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAP 532
The following BLAST results are available for this feature:
BLAST of TCONS_00047376-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCA112.739e-16645.95DDB1- and CUL4-associated factor 11 OS=Homo sapien... [more]
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