TCONS_00046632-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00046632-protein
Unique Name	TCONS_00046632-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1554

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00046632-protein ID=TCONS_00046632-protein|Name=TCONS_00046632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1554bp
MYLLALSDTIASSKDLDIERIEGSDIKKYRTEASASSYLASGGGGGGYAT
TGATGVGDFASDSVDECGLRFLILLRHHTTVLKSVSPKQRATLEQMGMLP
SEYCWAFHSDCTEELIAMLPGMKRNEPSWMDLRSHGAGWWIRSNDVLKRT
IEKVAKTHFQMNKDPLDSAIFYLAMKKKSLICALFRSLRDTKMSAFFSND
FTQERWRKAALKNAYALLGKQRFEHAAAFFILGSAIWDAVQVCVTRLHDI
QLALVIARLHENNMDETHQRVLKTYVLGYEDEPPNKDPFKRSMAHWLLKD
YRESVDVFLFTFQENLHSLEDNSPDEFDYPSVFNFYTYLKTHPLLRRRHL
TQHRSTSSSITRHESYSSQLSQLKQSTGENVYTLQRSLCFHTACIHLNSG
LPDIALEVLSMLPADEKTLEDENVSSELPLSSANEENMIVTGTFSGDFEE
QSTATTAVSNLNSTSNGHYSSSAFGSGWGDDYGMTSTNRFADLDDGYKIG
ISLSDSDSESENEVVKNDGGMDNDVTIEEAASEQQKETGDKNKGSTNDIA
ALNLKFRCIIQLLIEGLKALPSKCTLEKLKLRKTLKNMVQKELEYLHFIC
DYDRGIDLGGDSTTNESLNDTATFGSSDNEIGSGKSYRSFSSISNTSMDV
TQEEASLTQKVEQISVQSEWLKQNQKILASLYEHCLMVGTRDPELPAVCL
ELLLLLHEIEDHRVLNAPLTSISVGPSAPPLLLASISSFSLVSSPVGFLQ
SMAHDLLQTVIDLPKLPTPNNPVKRLADLESLMCSLSSCIYHSLCGGDDD
RLLTSIHKGETQLVGKQMKDGKLCRIPHGASNVEIEVTSSPSKWPGVKFF
LSILSANKKDERNVLNLLLCEAAVAVYLSFFVSACSRLSCNNLYRFVNNN
LNEEMWNHVFGGGTKVVIPAPEALNARSSPILEKRNSAKDTARMKWNYKL
LGKQSSGIQQSRVAERDQVTNNNDDQKLVRHELYIPPKLSLCDYFLKKPK
KSRSSFDYDPDSESDSDEESEDEQNTESEVEDDGLIDEKILQQRIEEKRK
KRTKLFEHFDSSSYPWLIMQLALVEITIKNINDFISLAGFELSDLPTQST
LLYNATKILIRWEQLLVASLDSYHVEENLIDAYHLNDGSVLRGGLTLQKT
KLLLDPDNTPFSLGRRVRPYKRLWYTLVQKEIVRSHFLHYAFKSAQYSGD
DQTDFEVITGHLLHKDPEAVTNVCVNMSNTGYMAVTTMHEIIEYDISGAM
EAEQSDVLHKLELVSDIAKEKKMFRGKTQTPVEIQRRPFSGTRRTASHPT
LPYYVVGGADGSVRMFEFIHPDQITLFRPPGEHERVNKIAFNPMGNKFAV
VDDSGYLSIWQVANTHETTPFYSMKCHSKNCVDFAFLGSSSLIATVGATN
DKRNVCIWDTLLSGRKALVHSFAHGNHGAQCLIYVPGQQALVTGGKRGDI
CIFDIRHRRLLHTFQGHDSLIKTMSLDPMEMFFVTGSVEGDIKVWSIEGS
EMLDSFPKEHARGTVSLRQISPGVQCIRVMPSRKIFSCGGDGTVKWRYTH
YKNS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029769	XLOC_029769	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00046632	TCONS_00046632	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR022033	Rav1p_C
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 1457..1496 e-value: 1.4E-5 score: 34.5 coord: 1415..1454 e-value: 4.5 score: 12.9 coord: 1367..1409 e-value: 0.8 score: 17.6 coord: 1320..1361 e-value: 0.74 score: 17.8 coord: 1278..1317 e-value: 24.0 score: 8.3 coord: 1514..1548 e-value: 11.0 score: 10.5
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 1459..1496 e-value: 0.013 score: 16.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 1464..1505 score: 13.215
IPR022033	RAVE complex protein Rav1 C-terminal	PFAM	PF12234	Rav1p_C	coord: 61..341 e-value: 1.7E-63 score: 215.0
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 258..1547 e-value: 2.3E-41 score: 141.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1001..1033
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 502..523
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1303..1505 score: 17.983
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 1295..1545

Blast

[Close]

BLAST of TCONS_00046632-protein vs. Swiss-Prot (Human)
Match: DMXL2 (DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2)

HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 537/1558 (34.47%), Postives = 825/1558 (52.95%), Query Frame = 0

Query:   62 DSVDECGLRFLILLRHHTTVLKSVSPKQRATLEQMGMLPSEYCWAFHSDCTEELIAMLPGMKRNEPSWMDLRSHGAGWWIRSNDVLKRTIEKVAKTHFQMNKDPLDSAIFYLAMKKKSLICALFRSLRDTKMSAFFSNDFTQERWRKAALKNAYALLGKQRFEHAAAFFILGSAIWDAVQVCVTRLHDIQLALVIARLHENNMD--ETHQRVLKTYVLGYEDEPP-------NKDPFKRSMAHWLLKDYRESVDVFLFTFQENLHSLEDNSPDEFD---------YPSVFNFYTYLKTHPLLRRRHLTQHRSTSSSITRHESYSSQLSQLKQSTGENVYTLQRSLCFHTACIHLNSGLPDIALEVLSMLPADEKTLEDENVSSELPLSSANEENMIVTGTFSGDFEEQSTATTAVSNLNSTSNGHYSS-SAFGSGWGDDYGMTSTNRFADLDDGYKIGISLSDSDSESENEVVKNDGGMDNDVTIEEAASEQQ-----KETGDKNKGSTNDIAALNLKFRCIIQLLIEGLKALPSKCTLEKLKLRKTLKNMVQKELEYLHFICDYDRGIDLGGDSTTNESLNDTATFGS--SDNEIGSGKSYRSFSSISNTSMDVTQEEASLTQKVEQISVQSEWLKQNQKILASLYEHCLMVGTRDPELPAVCLELLLLLHEIEDHRVLNAPLTSISVGPSAPPLLLASISSF-SLVSSPVGFLQSMAHDLLQTVIDLPKLPTPNNPVKRLADLESLMCSLSSCIYHSLCGGDDDRLLTSIHKGETQLVGKQMKDGKLCRIPHGAS-NVEIEVT--SSPSKWPGVKFFLSILSANKKDERNVLNLLLCEAAVAVYLSFFVSACSRLSCNNLYRFVNNNLNEEMWNHVFGGGTKVVI-PAPEALNARSSPILEKRNSAKDTARMKWNYKLL--GKQSSGIQQSRV-AERDQVTNNNDDQKLVRHELYIPPKLSLCDYFLKKP--KKSRSSFDYDPDSESDSDEESEDEQNTESEVEDDGLIDEKILQQRIEEKRKKRTKLFEHFDSSSYPWLIMQLALVEITIKNINDFISLAGFELSDLPTQSTLLYNATKILIRWEQLLVASLDSYH-VEENLIDAYHLNDGSVLRGGLTLQKTKLLLDPDNTPF-SLGRRVRPYKRLWYTLVQKEIVRSHFLHYAFKSAQYSGDDQTDFEVITG--HLLHKDPEAVTNVCVNMSNTGYMAVTTMHEIIEYDISGAM--------------EAEQSD---------VLHKLELVSDIAKEKK-------MFRGKTQTPVEI-QRRPFSGTRRTASHPTLPYYVVGGADGSVRMFEFIHPDQITLFRPPGEHERVNKIAFNPMGNKFAVVDDSGYLSIWQVANTHET-TPFYSMKCHSKNCVDFAFLGSSSLIATVGATNDKRNVCIWDTLLSGRKALVHSFAHGNHGAQCLIYVPGQQALVTGGKRGDICIFDIRHRRLLHTFQGHDSLIKTMSLDPMEMFFVTGSVEGDIKVWSIEGSEMLDSFPKEHARGTVSLRQISPGVQCIRVMPSRKIFSCGGDGTVKWR 1547
            D++DECGLR+L+ +R HT +L S+ P  R  L   G+    + WAFHS+  EELI M+P ++R +P W +LR+ G GWW+R+ + L+R IEKVAK  FQ N D LD+A+FYL+MKKK+++  LFRS  D KM+ FFS++F ++RWRKAALKNA++LLGKQRFE +AAFF+L  ++ DA++VC+ ++ DIQLA+VIARL+E+  +   T+  +L   +LG + +         + DPF RS+A+W++KDY  ++D  L           + +P E D          P  F+FY YL+THPLL RR+L     T +++           + +++  + +  ++R L F TA  H   G P +ALEVLS +P   KT           LS+  ++   +    S   ++  + + A+S+ N +S   +S+ ++    W             +LD G     +L + + ++   V+K+    + D   ++ AS+       +E  D    +  D+ A  LKFR  +++L+  L+ L +   ++  KLR  L N ++KE+  LH IC+++  I      T ++  +D           +IGS + ++              E   L  K E    +  WL++NQ +L     +C + G +   L +V +EL  LL E +    +   L S    P+  PLL ASI+S  +++++PV +L +  HD+L T++ +   P P+    ++  L SL  SLS+ IY +LC    D    S  +G  Q  G   +   L       + ++E   T  SSP++WPGV   +++LS+ + +++  LN+LLCEA VAVYLS  + A +  S + L+R   + LN  MW  VFGGG K+V+ P  ++ N  + P+L +     D  R ++N ++L  G+         V AER               E +IPP+LS+ DYF+ KP    S S   YD D    SDE            EDD    +              T++ EH D +SY W ++ L +V++ + N+ +F  +AG E S+LP  S L     K L  WEQ+L   +D +     N I+ Y   D SV  G   L + K +L+P+NTPF S      P KRLW+ LV++E+++  F+ Y F   +   + + D     G   ++HK+ + +    VN +N   + + + H++ E D++  +              E++ SD          L++    S  A +         +  G+T T   +  +R     +R  SHP   YY+ G  DGSVRMFE+  P Q+  FR  G + RV ++ FN  GNK  V D  G+LSIWQV  T     P+ S +CHSK   DFAF+ SSSL+AT G +ND RNVC+WDTL+S   +L+H F   +HGA  L Y P QQ L++GG++G +CIFDIR R+L+HTFQ HDS IK ++LDP E +F TGS EG+IKVW + G  ++ SF  EHA+ ++  R I  GV  I ++   ++FSCG DGT+K R
Sbjct: 1560 DTLDECGLRYLLAMRLHTCLLTSLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNINTLRRCIEKVAKASFQRNNDALDAALFYLSMKKKAVVWGLFRSQHDEKMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLYESEFETSSTYISILNQKILGCQKDGSGFSCKRLHPDPFLRSLAYWVMKDYTRALDTLL-----------EQTPKEDDEHQVIIKSCNPVAFSFYNYLRTHPLLIRRNLASPEGTLATLGL---------KTEKNFVDKINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVTKTSA---------LSAKKDQPDFI----SHRMDDVPSHSKALSDGNGSSGIEWSNVTSSQYDWSQPIVKVDEEPL-NLDWGEDHDSALDEEEDDAVGLVMKSTDAREKDKQSDQKASDPNMLLTPQEEDDPEGDTEVDVIAEQLKFRACLKILMTELRTLATGYEVDGGKLRFQLYNWLEKEIAALHEICNHESVIKEYSSKTYSKVESDLLDQEEMVDKPDIGSYERHQI-------------ERRRLQAKREHAERRKSWLQKNQDLLRVFLSYCSLHGAQGGGLASVRMELKFLLQESQQETTVKQ-LQSPLPLPTTLPLLSASIASTKTVIANPVLYLNNHIHDILYTIVQMKTPPHPSIEDVKVHTLHSLAASLSASIYQALC----DSHSYSQTEG-NQFTGMAYQGLLLSDRRRLRTESIEEHATPNSSPAQWPGVSSLINLLSSAQDEDQPKLNILLCEAVVAVYLSLLIHALATNSSSELFRLAAHPLNNRMWAAVFGGGVKLVVKPRRQSENISAPPVLSED---IDKHRRRFNMRMLVPGRPVKDATPPPVPAERPSYK-----------EKFIPPELSMWDYFVAKPFLPLSDSGVIYDSDESIHSDE------------EDDAFFSD--------------TQIQEHQDPNSYSWALLHLTMVKLALHNVKNFFPIAGLEFSELPVTSPLGIAVIKNLENWEQILQEKMDQFEGPPPNYINTYP-TDLSVGAGPAIL-RNKAMLEPENTPFKSRDSSAFPVKRLWHFLVKQEVLQETFIRYIFTKKRKQSEVEADLGYPGGKAKVIHKESDMIMAFSVNKANCNEIVLASTHDVQELDVTSLLACQSYIWIGEEYDRESKSSDDVDYRGSTTTLYQPSATSYSASQVHPPSSLPWLGTGQTSTGASVLMKRNLHNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAG-NARVTRLYFNSQGNKCGVADGEGFLSIWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNRNVCLWDTLISPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSEHAKQSI-FRNIGAGVMQIDIIQGNRLFSCGADGTLKTR 3020

The following BLAST results are available for this feature:

BLAST of TCONS_00046632-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00046632-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DMXL2	0.000e+0	34.47	DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 S...	[more]

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TCONS_00046632-protein (polypeptide) - C. hemisphaerica