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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00046030-protein ID=TCONS_00046030-protein|Name=TCONS_00046030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
DGTAYYQIKWKTSWERADSLSQFGELLDEFWAKVKKASTANMFNNTSVNR
KEPAIVPRPKPTTQQSNNTQQKNAPRTPTQKKRTPSTSHTPRTPQQQQQQ
QQQQQFFQQSQQIQQMQSFQPPPQQPPPATQSMGQPSSVTLIDSDDDDDD
VIAINPPPSGANNMSFNSMNLNNIKLEDFDQKPQLGFPPQPFAGGLPPQQ
QSFMNPTNGRGGGGGNRGRGSGGTGGRGRGRGRGSGPSPAKRKLGMPPAG
SATPPMKMEPGASPIKHESSSASSSSVSGSWESNFEIIEKRNFDGSVSET
NYRCKICSVMITNKSSCSRHFKVHTGEKSFVCPICQNGFIRQDYLQRHMK
SHGNSSGAELESLVKLAMSGVKKAS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 302..324
e-value: 0.93
score: 18.5
coord: 330..352
e-value: 4.5E-4
score: 29.5 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 304..324 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 332..352 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 302..329
score: 11.822 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 330..357
score: 10.367 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 302..352 |
| None | No IPR available | PFAM | PF13894 | zf-C2H2_4 | coord: 330..352
e-value: 3.4E-4
score: 21.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 329..355
e-value: 1.1E-10
score: 40.8 |
| None | No IPR available | GENE3D | 1.10.565.10 | | coord: 60..292
e-value: 1.6E-4
score: 20.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 39..167 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 181..280 |
| None | No IPR available | CDD | cd00024 | CHROMO | coord: 1..33
e-value: 0.0054606
score: 33.3915 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 294..328
e-value: 2.0E-8
score: 33.6 |
Blast
The following BLAST results are available for this feature:
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