TCONS_00044003-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044003-protein
Unique NameTCONS_00044003-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044003-protein ID=TCONS_00044003-protein|Name=TCONS_00044003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
LHEFVASMGPDDKLIVFVGRKVTADDISSNFAMYGERDFGIQSIHGNRDQ
ADREQALQDMKTGAARVLIATDVASRGLDIKDLTHVLNYDFPRHIEDYVH
RIGRTGRAGRSGVALTFVTREDWMHVGKLIPILEEAGQEIPEELIEMSER
ARKNRERRLDEKNRERGMVGDRTRSGCYNCGKEGHMSRECPEQSRRGGRG
SGRGGGRGGGRGRRERGGGISIGRSDFA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027660XLOC_027660Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044003TCONS_00044003Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR001878Znf_CCHC
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..165
NoneNo IPR availableGENE3D3.40.50.300coord: 1..145
e-value: 1.5E-38
score: 131.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..228
NoneNo IPR availableCDDcd00079HELICccoord: 10..117
e-value: 3.35883E-31
score: 111.561
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 21..109
e-value: 3.4E-27
score: 106.3
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 9..109
e-value: 1.8E-25
score: 89.3
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..148
score: 21.389
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 176..192
e-value: 1.5E-6
score: 37.7
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 176..192
e-value: 2.5E-8
score: 33.5
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 146..203
e-value: 9.2E-8
score: 31.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 177..192
score: 11.795
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 169..196
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..152

Blast
[Close]
BLAST of TCONS_00044003-protein vs. Swiss-Prot (Human)
Match: DDX43 (Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens GN=DDX43 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 4.979e-57
Identity = 90/166 (54.22%), Postives = 125/166 (75.30%), Query Frame = 0 
Query:    1 LHEFVASMGPDDKLIVFVGRKVTADDISSNFAMYGERDFGIQSIHGNRDQADREQALQDMKTGAARVLIATDVASRGLDIKDLTHVLNYDFPRHIEDYVHRIGRTGRAGRSGVALTFVTREDWMHVGKLIPILEEAGQEIPEELIEMSERARKNRERRLDEKNRER 166
            +  F+ SM   DK+IVFV RK  AD +SS+  +    +  ++S+HG+R+Q DRE+AL++ KTG  R+LIATD+ASRGLD+ D+THV N+DFPR+IE+YVHRIGRTGRAGR+GV++T +TR DW    +LI ILE A Q IPEEL+ M+ER + ++++R  E+  ER
Sbjct:  477 MQTFLQSMSSTDKVIVFVSRKAVADHLSSDLIL---GNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELVSMAERFKAHQQKREMERKMER 639
The following BLAST results are available for this feature:
BLAST of TCONS_00044003-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX434.979e-5754.22Probable ATP-dependent RNA helicase DDX43 OS=Homo ... [more]
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