TCONS_00023926-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00023926-protein
Unique Name	TCONS_00023926-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	576

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00023926-protein ID=TCONS_00023926-protein|Name=TCONS_00023926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp
YIKETMVWYKSLYRSCTRKKTLDATSITSTELQRCLSTLDLTFVGIGSTL
GAGIYVLAGEVARNKAGPAIILSFLIAALASILSGLCYAEFGARVPKAGS
AYLYCYITIGEILGFLVGWNIILEYIIGAASIVRATSAYIDTLTHGAIKN
GTIDLIGQMDTPYIAHYFDLFAIFITFATTILLSLGVKNSARFNNVCVVT
NMLTILLVIIVGLVHADFKNWSNFAPFGAQGVFAGAATCFFAFVGFDVIA
TTSEEAQNPGRSIPFSITGTIVFCFLAYFGVSGAITLMVPYTELDPTAAV
TQAFHQRGLKFMGYIIGVGACLGLIGCTIISMMPLPRLLYALSQDGLLPA
FFSKVHGKTGVPVLSTVISGVLIGLLGALLDIDALVEMLSIGTLLAYTVV
DICIIILRYRTYEKDDEDTIKSSSNNTRLYTLVMAALIELIIIDTILSKY
LKTLQESRFLLVLIVAVAISFVLTSIFIARLKPNPTNYSFQVPGLPWIPL
AGLFFNIYLMLSLSHLTWYRLIVWMVIGFVVYFGYSIHHSVEKINPSGIG
EDGESQPLMERETLLIQSGDESLKEN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013451	XLOC_013451	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00023926	TCONS_00023926	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002293	AA/rel_permease1
IPR029485	CAT_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0015171	amino acid transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0003333	amino acid transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0015171	amino acid transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002293	Amino acid/polyamine transporter I	PIRSF	PIRSF006060	AA_transporter	coord: 17..422 e-value: 7.1E-86 score: 286.1 coord: 459..557 e-value: 0.19 score: 7.6
IPR002293	Amino acid/polyamine transporter I	PFAM	PF13520	AA_permease_2	coord: 36..414 e-value: 7.5E-54 score: 183.1
IPR029485	Cationic amino acid transporter, C-terminal	PFAM	PF13906	AA_permease_C	coord: 490..540 e-value: 2.9E-20 score: 72.0

Blast

[Close]

BLAST of TCONS_00023926-protein vs. Swiss-Prot (Human)
Match: CTR3 (Cationic amino acid transporter 3 OS=Homo sapiens GN=SLC7A3 PE=1 SV=1)

HSP 1 Score: 423.32 bits (1087), Expect = 1.459e-141
Identity = 248/604 (41.06%), Postives = 349/604 (57.78%), Query Frame = 0

Query:    6 MVW--YKSLYRSCTRKKTLDATSITSTELQRCLSTLDLTFVGIGSTLGAGIYVLAGEVARNKAGPAIILSFLIAALASILSGLCYAEFGARVPKAGSAYLYCYITIGEILGFLVGWNIILEYIIGAASIVRATSAYIDTLTHGAIK---NGTIDLIGQMDTPYI-AHYFDLFAIFITFATTILLSLGVKNSARFNNVCVVTNMLTILLVIIVGLVHADFKNWS-------------------------NFAPFGAQGVFAGAATCFFAFVGFDVIATTSEEAQNPGRSIPFSITGTIVFCFLAYFGVSGAITLMVPYTELDPTAAVTQAFHQRGLKFMGYIIGVGACLGLIGCTIISMMPLPRLLYALSQDGLLPAFFSKVHGKTGVPVLSTVISGVLIGLLGALLDIDALVEMLSIGTLLAYTVVDICIIILRYRTYEKD--------DEDTIKSSSNNTRLYTLVMAALIELIIIDTILSKYLKTLQESRFLLVLIVAVAISFVLTSIFIA-------------------------RLKPNPTNYSFQVPGLPWIPLAGLFFNIYLMLSLSHLTWYRLIVWMVIGFVVYFGYSIHHSVEKIN 545
            M W  ++   +   R++TL+ + +  T L RCLSTLDL  +G+GSTLGAG+YVLAGEVA++KAGP+I++ FL+AAL+S+L+GLCYAEFGARVP++GSAYLY Y+T+GE+  F  GWN+IL Y+IG AS+ RA S+  D L    I     G+I L      P++ A Y D FA+ +    T LL+LG   SA    V    N+L +  V+I G V  D  NW                           F PFG +G+  GAATCF+AFVGFD IATT EEAQNP RSIP  I  ++  CFLAYF VS A+TLM+PY +L P + + +AF   G     Y++ VG+   L    + SM P+PR++YA+++DGLL    +++H  T  P+++TV+SG++   +  L  +  LV+++SIGTLLAY++V IC++ILRY+  ++          E+ I + S    L+ L       L  I T LS  +  +  S  L VL+ A+ +     S+ +                          R   + T   F+VP LP +PL  +F NIYLM+ ++  TW R  VWM+IGF +YFGY I HS+E+I 
Sbjct:    1 MPWQAFRRFGQKLVRRRTLE-SGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSVLAGLCYAEFGARVPRSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLIGNHISKTLQGSIAL----HVPHVLAEYPDFFALGLVLLLTGLLALGASESALVTKVFTGVNLLVLGFVMISGFVKGDVHNWKLTEEDYELAMAELNDTYSLGPLGSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQRSIPMGIVISLSVCFLAYFAVSSALTLMMPYYQLQPESPLPEAFLYIGWAPARYVVAVGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFRVLARIHTGTRTPIIATVVSGIIAAFMAFLFKLTDLVDLMSIGTLLAYSLVSICVLILRYQPDQETKTGEEVELQEEAITTESEKLTLWGL----FFPLNSIPTPLSGQIVYVCSS-LLAVLLTALCLVLAQWSVPLLSGDLLWTAVVVLLLLLIIGIIVVIWRQPQSSTPLHFKVPALPLLPLMSIFVNIYLMMQMTAGTWARFGVWMLIGFAIYFGYGIQHSLEEIK 594

The following BLAST results are available for this feature:

BLAST of TCONS_00023926-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00023926-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTR3	1.459e-141	41.06	Cationic amino acid transporter 3 OS=Homo sapiens ...	[more]

You are here

TCONS_00023926-protein (polypeptide) - C. hemisphaerica