TCONS_00022472-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022472-protein
Unique NameTCONS_00022472-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022472-protein ID=TCONS_00022472-protein|Name=TCONS_00022472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp
MSDSWCDPRHQPASDFVGTIHYTSEDNSNPPSSTTSPDITSTHDQLSLQQ
NTVSVASPPASSGNATTANNIGDKPTPPSESNTITYHETNQSEPNTSHFL
TNSLNNNVQYPNYFYPSSNGLGPNSTDGNLSVTNEPTTSQHPVTSHHPHQ
QPKEINEGYLDTAYNNYNTNNNSNDHPQLNKYDRYALWSEGGTTQNPSNN
FNTPLLPPPYPPSHFGYQKFWPSSRFNRRTVVTPKDSPIKMTLENKAMIE
RFDKYCTEMIITKTGRRMFPSPQITLQGLESTQKYFVLFDVTPADDNRYK
FHHFNWVIAGKAEPLPPVRFYIHPESPLTGAQWIKQQITFQKVKLTNNTC
DQHGHLILNSMHRYQPRIHVVQASDIYQLQYQTFHTYAFPECQFIAVTAY
QNSQITQLKIEHNPFAKGFRKQEKDKSKSHEEDRPSNGKEKRMEDTDFKK
PYCFDPKFASERKSLNHYDASIGRWNYLDQQMNQSGYTNRPIAPTDCCNS
QSKYEYRYPAPMNTYNDFEKTQQHFQNIELMKSYMDYNQTETVPRAIPFM
PEYPSSTDFKVNGPSFI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012602XLOC_012602Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022472TCONS_00022472Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001699Transcription factor, T-boxPRINTSPR00937TBOXcoord: 413..421
score: 81.4
coord: 338..347
score: 65.22
coord: 256..280
score: 57.65
coord: 392..405
score: 69.1
coord: 321..334
score: 57.3
coord: 357..371
score: 71.74
IPR001699Transcription factor, T-boxSMARTSM00425tbox5coord: 238..426
e-value: 5.8E-99
score: 344.7
IPR001699Transcription factor, T-boxPFAMPF00907T-boxcoord: 242..421
e-value: 1.6E-72
score: 243.5
IPR001699Transcription factor, T-boxGENE3D2.60.40.820coord: 235..427
e-value: 6.0E-84
score: 280.1
IPR001699Transcription factor, T-boxPROSITEPS50252TBOX_3coord: 243..421
score: 69.447
IPR001699Transcription factor, T-boxCDDcd00182TBOXcoord: 238..424
e-value: 5.04107E-101
score: 305.281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 416..444
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..153
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 238..421

Blast
[Close]
BLAST of TCONS_00022472-protein vs. Swiss-Prot (Human)
Match: TBX2 (T-box transcription factor TBX2 OS=Homo sapiens GN=TBX2 PE=1 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 1.692e-72
Identity = 111/192 (57.81%), Postives = 143/192 (74.48%), Query Frame = 0 
Query:  240 KMTLENKAMIERFDKYCTEMIITKTGRRMFPSPQITLQGLESTQKYFVLFDVTPADDNRYKFHHFNWVIAGKAEPLPPVRFYIHPESPLTGAQWIKQQITFQKVKLTNNTCDQHGHLILNSMHRYQPRIHVVQASDIYQLQYQTFHTYAFPECQFIAVTAYQNSQITQLKIEHNPFAKGFR-----KQEKDK 426
            K+TLE K + ++F K  TEM+ITK+GRRMFP  ++ + GL+   KY +L D+  ADD RYKFH+  W++AGKA+P  P R YIHP+SP TG QW+ + + F K+KLTNN  D+HG  ILNSMH+YQPR H+V+A+DI +L Y TF TY FPE  FIAVTAYQN +ITQLKI++NPFAKGFR     ++EK K
Sbjct:  106 KVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNGRREKRK 297
The following BLAST results are available for this feature:
BLAST of TCONS_00022472-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBX21.692e-7257.81T-box transcription factor TBX2 OS=Homo sapiens GN... [more]
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