TCONS_00021450-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021450-protein
Unique Name	TCONS_00021450-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1466

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021450-protein ID=TCONS_00021450-protein|Name=TCONS_00021450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1466bp
MNRADTVPIATLSGIACLTDISQELSLPAASTSTKDVKLFETQVESNLAG
QAVYSNEFPHSHLMKHLENVNTAYLDFKNSSFTCQPPLSLSNQMPMRLQQ
ILQMRPGLFEPKFDTYHGSPLKANNVSALAYSPNQRNAFIQQQMLQQQQL
QQQQAATSSRMHSSQSPMDSSMQSPQIPKQQFTPSPSTPNAAVRNLQNFS
TPEAIHISHQQQHHQQLYVPMQQMPVLSPQKRVQQNLQQQVLIQQQQQQN
LQQNQYNNQQNRQPNQMQHQLHQNQQHTAPTSQQQPFPTASPQQTIPPQQ
IPSKQDIHSQLAEQKPPPLNHHPQQQLEEAPTSQQVPTENDLHLMFSPLK
TRGQRNEGLAQPVIQTPTSSTPAQETANNISLDAEAEDESARKSSKKKHK
EKHKHKHHKHHDKEKYHHKEKQNHDPIEENSMTNNGPMLELRVPKLIVRK
ITVKEGNQERQTMEVYSPEKKKQFTDVITGEDYVRMVEDQVMEPKKATKR
ARSRRSSKASSIASLESLNHNKKRKKKSRLESSSEEEEADTEVFEQDSKR
FRPEDYNEYNDFDGVEVKAEVKKFMFTLKKILDREIELEADGDLDYNEDA
EIPPEILLPKPLVSTFCYEVAKMKASDSLNEVPVDQLVRVMSIMDRHVLD
TMMLSIFHEEDQEETKQWLSIQSERIVRSAEAAIIILNITTAKNMPKQVY
LEEAIEHVAMFCQHHLETIIYPEFDPIYKSADVKDGGYKTKRNYRSSSGA
KRKPILQIYNKLCEVVALLSDLVCLESLTDSIILKISQIGIAPFFVENVN
ILQLEALKVARTVFRDYVKHRDLILDDILASLARLPTNKRNLRNYSLQDN
ECIQMFTALVLQLVQCTVQIPNNLLESEDTKSDVLVDKDVLIVKSYEDAL
RAAQNFMGIFLRKCSSNSRDENDFRPLFENFLHDLFVTANLPEWPAAEVL
LTQLGRLFVVTFSNSKLDMTLRSTALDYLAQIATHLRKAHMHSQTDEEKE
NLKNIVAKLINANEEDEEINVVEDMEVYDEKLRKALVQYLQTCIQQDSSF
KYAREFYLGQWIRDAQMEIEKSMIAPMLSIPGAAVASVDDEEEKTKAEVS
AEKLQILQEKKDFYHALIKENTVSTLRSSQRLTQPESLIVVHHLASSRPF
SQSFDLYMQQIFKMLSEQAIGLRTKAVKALTQIVSVDSNILAREDVQASV
HGRLLDPSTNVREAAVDLIGNFMLKCPELINQYYSMIIDRILDTGVSVRK
RVIKILKDICVEQPEFDKIPEICAKMIRRVDDELGIKKLVTEVFRTMWFQ
PFTNAEKHEKQLYTKALNITKVVALCKDTGFEWLESLLTNLFDPENQQSR
QITIKACQQLVNCLVQQILKPELKSSPTTINSCLLTLYLFCKSYPRLLVP
HGSTLSPYLTSKINSQNDTIITQNVCKXPVLQIIPQTSRSTRLHTFTLPN
VQNQFTERHYYNAERL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012025	XLOC_012025	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021450	TCONS_00021450	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR026003	Cohesin_HEAT
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 234..254
None	No IPR available	COILS	Coil	Coil	coord: 992..1019
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..17 score: 5.0
IPR026003	HEAT repeat associated with sister chromatid cohesion protein	PFAM	PF12765	Cohesin_HEAT	coord: 1178..1219 e-value: 7.1E-13 score: 48.4
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 1085..1423 e-value: 1.8E-21 score: 75.7
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 634..1062 e-value: 0.046 score: 11.8
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 1118..1420

Blast

[Close]

BLAST of TCONS_00021450-protein vs. Swiss-Prot (Human)
Match: NIPBL (Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2)

HSP 1 Score: 707.212 bits (1824), Expect = 0.000e+0
Identity = 391/893 (43.78%), Postives = 574/893 (64.28%), Query Frame = 0

Query:  572 KKFMFTLKKILD--REIELEADGDLDYNEDAEIPPEILLPKPLVSTFCYEVAKMKASDSLNEVPVDQLVRVMSIMDRHVLDTMMLSIF--HEED-QEETKQWLSIQSERIVRSAEAAIIILNITTAKNMPKQVYLEEAIEHVAMFCQHHLETIIYPEFDPIYKSADVKDGGYKTKRNYRSS-SGAKRKPILQIYNKLCEVVALLSDLVCLESLTDSIILKISQIGIAPFFVENVNILQLEALKVARTVFRDYVKHRDLILDDILASLARLPTNKRNLRNYSLQDNEC------IQMFTALVLQLVQCTVQIPNNLLESE-DTKSDVLVDKDVLIVKSYEDALRAAQNFMGIFLRKCSSNSRDENDFRPLFENFLHDLFVTANLPEWPAAEVLLTQLGRLFVVTFSNSKLDMTLRSTALDYLAQIATHLRKAHMHSQTDEEKENLKNIVAKLINANEEDEEINVVEDMEVYDEKLRKALVQYLQTCIQQDSSFKYAREFYLGQWIRDAQMEIEKSMIAPMLSIPGAAVASVDDEEEKTKA------EVSAEKLQILQEKKDFYHALIKE--NTVSTLR-SSQRLTQPESLIVVHHLASSRPFSQSFDLYMQQIFKMLSEQAIGLRTKAVKALTQIVSVDSNILAREDVQASVHGRLLDPSTNVREAAVDLIGNFMLKCPELINQYYSMIIDRILDTGVSVRKRVIKILKDICVEQPEFDKIPEICAKMIRRVDDELGIKKLVTEVFRTMWFQPFTNAEKHEKQLYTKALNITKVVALCKDTGFEWLESLLTNLFDPENQQSRQITIKACQQLVNCLVQQILKPE---LKSSPTTINS-----CLLTLYLFCKSYPRLLVPHGSTLSPYLTSKINSQNDTIITQNVCKXPVLQII 1434
            K+F  +++ ILD   +++  A GD     D EIP E+LL K  ++    E AK+KA   ++++  D+ V+V++I+++++ D   LS    H  D +EE + W  +  ER+ +SA+A +  +NI T+ NMPK VY+E+ IE V  + + HL+  +YP++DP+Y+  D   GG  + +  R+  S  K++ I+ +YNK+C++V+ LS+L+ ++ LTD+ IL++S +GI PFFVENV+ LQL A+K+   VF  Y KHR LIL++I  SLARLPT+KR+LRN+ L  ++       IQM TALVLQL+QC V +P++  +S  +  S+  +D+DV+I  SYE A+R AQNF+ IFL+KC S  + E D+RPLFENF+ DL  T N PEWPAAE+LL+ LGRL V  FSN   +M LR  +LDYL  +A  LRK  + S+ D+   +++ I+ ++    +E ++             L+KAL+ YL    + D S  ++R+FY+ QW RD  +E EK+M             S  DEE           E + + +   + +K F  ++IK   +  STL+ +S  +   ++ ++V +LAS RPF+QSFD+Y+ QI ++L E AI +RTKA+K L+++V+VD +ILAR D+Q  VHGRL+D ST+VREAAV+L+G F+L  P+L  QYY M+I+RILDTG+SVRKRVIKIL+DIC+EQP F KI E+C KMIRRV+DE GIKKLV E F+ +WF P  + +K  + +  K LNIT VVA C+DTG++W E LL NL   E   S +   KAC QLV+ LV+ ILK E     S    +NS     C+ TL+LF K  P+L+V H  T+ PYLT+K ++QND ++  NV K  +L+++
Sbjct: 1200 KRFTASIENILDNLEDMDFTAFGD-----DDEIPQELLLGKHQLNELGSESAKIKAMGIMDKLSTDKTVKVLNILEKNIQDGSKLSTLLNHNNDTEEEERLWRDLIMERVTKSADACLTTINIMTSPNMPKAVYIEDVIERVIQYTKFHLQNTLYPQYDPVYR-LDPHGGGLLSSKAKRAKCSTHKQRVIVMLYNKVCDIVSSLSELLEIQLLTDTTILQVSSMGITPFFVENVSELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDMDGEPMYIQMVTALVLQLIQCVVHLPSSEKDSNAEEDSNKKIDQDVVITNSYETAMRTAQNFLSIFLKKCGSK-QGEEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQG--SIERILKQVSGGEDEIQQ-------------LQKALLDYLDENTETDPSLVFSRKFYIAQWFRDTTLETEKAM------------KSQKDEESSEGTHHAKEIETTGQIMHRAENRKKFLRSIIKTTPSQFSTLKMNSDTVDYDDACLIVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQKLWFTPTPHNDK--EAMTRKILNITDVVAACRDTGYDWFEQLLQNLLKSEEDSSYKPVKKACTQLVDNLVEHILKYEESLADSDNKGVNSGRLVACITTLFLFSKIRPQLMVKHAMTMQPYLTTKCSTQNDFMVICNVAK--ILELV 2054

The following BLAST results are available for this feature:

BLAST of TCONS_00021450-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021450-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NIPBL	0.000e+0	43.78	Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=...	[more]

You are here

TCONS_00021450-protein (polypeptide) - C. hemisphaerica