TCONS_00019486-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019486-protein
Unique Name	TCONS_00019486-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	672

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019486-protein ID=TCONS_00019486-protein|Name=TCONS_00019486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp
MYHELLIALSGLPGAIFKADKYGGLEVTKNLPFLHPSEAELLDKLCSLGG
HYRSLLKFIETYSVDLSPIDHLLKNDNRNPLEGQYLHAFCAGLTSVLKPY
QDSLVQIERRVMKDPYTSLSHIHRGLEEYFFIFPVLSGLVETMDTNKLHG
CQVLELLYNESNTGNPTVRKAILKILHACHGVLFKQLSAWMIYGILMDEY
DEFFISMKSTEGGKRKSETDEVDGAVLSSETILRGVSGREVLEELQLDDD
ELSSSKHEARIMVVPNMLPTYIPLRLAQKILFIGESVQMLKDTENLKIHH
YDENIGNLLQGRENDFLKTLHDLQERQEFSIPALEVEVDKIKACVAEQLW
KLVVEDADLIKHLKLLKEMYLLGRGELYLTLIDHLHTTMKGPPTTVMSYD
ISAAFKQSLAKILTYSEEYEDLFELKLDMKTDDQTSNEKFKSTWDLLQVQ
YNPPWPLHLLFTPSIMEKLNMLFTFLLKVRRTQIELQGLWAFLMSAKRSG
KIKMTSGPIWVLRRRMAFFIDNLQYYLQVDVLETQFSLLISKIHKTQSFE
NINRSLDNFLIEMLKQSFVSMKKVFNILHEIIYHCMAFCETVTSSDDLWD
TSSKTEERIERIAEEYNKQTSLLFTILSSVRSHQTSPHLAQLLLRIDFNK
FFTKKSAISMTSSSSSSSKDLL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010948	XLOC_010948	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019486	TCONS_00019486	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007259	GCP

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization
GO:0007020	microtubule nucleation

Vocabulary: **Molecular Function**
Term	Definition
GO:0043015	gamma-tubulin binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000922	spindle pole
GO:0005815	microtubule organizing center

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0007020	microtubule nucleation
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0000922	spindle pole
molecular_function	GO:0043015	gamma-tubulin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007259	Gamma-tubulin complex component protein	PFAM	PF04130	Spc97_Spc98	coord: 4..568 e-value: 2.9E-98 score: 329.9

Blast

[Close]

BLAST of TCONS_00019486-protein vs. Swiss-Prot (Human)
Match: GCP4 (Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1)

HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 279/675 (41.33%), Postives = 427/675 (63.26%), Query Frame = 0

Query:    1 MYHELLIALSGLPGAIFKADKYGGLEVTKNLPFLHPSEAELLDKLCSLGGHYRSLLKFIETYSVDLSPIDHLLKNDNRNPLEGQYLHAFCAGLTSVLKPYQDSLVQIERRVMKDPYTSLSHIHRGLEEYFFIFPVLSGLVETMDTNKLHGCQVLELLYNESNTGNPTVRKAILKILHACHGVLFKQLSAWMIYGILMDEYDEFFISMKSTEGG-KRKSETDEVDGAVLSSETILRGVSGREV--LEELQLDDDELSSSKHEARIMVVPNMLPTYIPLRLAQKILFIGESVQMLKDTENLKIHHYDENIGNLLQGRENDFLKTLHDLQERQEFSIPALEVEVDKIKACVAEQLWKLVVEDADLIKHLKLLKEMYLLGRGELYLTLIDHLHTTMKGPPTTVMSYDISAAFKQSLAKILT---------------YSEEYEDLFELKLDMKTDDQTSNEKFKSTWDLLQVQYNPPWPLHLLFTPSIMEKLNMLFTFLLKVRRTQIELQGLWAFLMSAKRSGKIKMTSGPIWVLRRRMAFFIDNLQYYLQVDVLETQFSLLISKIHKTQSFENINRSLDNFLIEMLKQSFVSMKKVFNILHEIIYHCMAFCETVTSSDDLWDTSSKTEERIERIAEEYNKQTSLLFTILSSVRSHQTSPHLAQLLLRIDFNKFFTKKSA 657
            M HELL+ALSG PG+IF  +K  GL+V+++ PFLHPSE  +L++LC LG  Y    +FIE Y+  +   DH      +  L G YL AFC GL SVL+PY+ +L+ +E+  + DP+ S+SH++  L+++  +FP +  +VE + + K+HGCQ+LE +Y  S  G P VR A+ KIL  CHGV++KQLSAWM++G+L+D+++EFFI    + G    + E DE D  +        G++G+++  L++L+L ++E   +    +  +   +LP+YIP+R+A+KILF+GESVQM ++ +N+ +       G++L+ +E+ F   LH L+++  FS+   E  VD+I++ VAE LWKL+VE++DL+  LK++K+ YLLGRGEL+   ID     +K PPT V  +D++ AF+QS  K+L                + +E++       +  + + +  E   S W  L + Y   WPLH+LFTP+++EK N++F +LL VRR Q ELQ  WA  M  K   K   T    W LR  MAF +DNLQYYLQVDVLE+QFS L+ +I+ T+ FE+I  + D+FL  +L QSF+ +K VF+ L+EI+  C +FC  V  S +L     +   ++  + + +++Q+SLLF ILSSVR+HQ +  LAQLLLR+D+NK++T+   
Sbjct:    1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGI-------GGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFEN-QNVNL----TRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKADATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHL-KSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLV--SQNLGPLDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGG 660

The following BLAST results are available for this feature:

BLAST of TCONS_00019486-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019486-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GCP4	0.000e+0	41.33	Gamma-tubulin complex component 4 OS=Homo sapiens ...	[more]

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TCONS_00019486-protein (polypeptide) - C. hemisphaerica