Gsc Goosecoid protein (polypeptide) - C. hemisphaerica

Overview
NameGsc Goosecoid protein
Unique NameTCONS_00019164-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019164-protein ID=TCONS_00019164-protein|Name=Gsc Goosecoid protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MSGFLIENLLKDDGRRFQEKTDYTLREGSESIDEHRHSPPFDLTPSPVRE
TPCKSRHVYQEEDFVHLLHQHHRNDHVSIRGAKMSNICEKDLSCKCEICV
CMLCYEWHSTWKRSNLSRFQKHSLSIKNIHPKHCSRDYGKLPSLTFIGYA
RKYGGHSPHGKLPYPTSTPGSNNNGNNPSSNGFRRRHRTIFSDEQLELME
RMFDRTHYPDVMVREEIARMINLTEEKVEVWFKNRRARWRKQKKDTHNSS
PKGLRGGISSALNHGKLTMNSSYVIDSEGSISPCSPIREIEKALSKTPH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010754XLOC_010754Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019164TCONS_00019164Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 184..246
e-value: 2.4E-25
score: 100.2
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 185..241
e-value: 2.6E-21
score: 75.1
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 182..242
score: 19.985
NoneNo IPR availableGENE3D1.10.10.60coord: 178..252
e-value: 4.2E-27
score: 93.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..46
NoneNo IPR availableCDDcd00086homeodomaincoord: 185..243
e-value: 1.57085E-21
score: 84.6024
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 217..240
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 166..244

Blast
[Close]
BLAST of Gsc Goosecoid protein vs. Swiss-Prot (Human)
Match: GSC (Homeobox protein goosecoid OS=Homo sapiens GN=GSC PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.918e-24
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 0 
Query:  184 RRRHRTIFSDEQLELMERMFDRTHYPDVMVREEIARMINLTEEKVEVWFKNRRARWRKQKK 244
            +RRHRTIF+DEQLE +E +F  T YPDV  RE++AR ++L EEKVEVWFKNRRA+WR+QK+
Sbjct:  160 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKR 220
The following BLAST results are available for this feature:
BLAST of Gsc Goosecoid protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSC5.918e-2467.21Homeobox protein goosecoid OS=Homo sapiens GN=GSC ... [more]
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