TCONS_00017871-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017871-protein
Unique Name	TCONS_00017871-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	295

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017871-protein ID=TCONS_00017871-protein|Name=TCONS_00017871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MSNSTKAESLVEGETFIGDDLITEGLKVLAEKCEKSMADLSSNRGKFNIG
KAAELIFNLCQKFELPVEVKYAAIELFDQFMTIHITELQEIVRASSSAEK
QLDWSSVEARIKDQVVLRAMTCVQIASKLVSHYKAVHPSKVKRYLSACNL
HYSMSSVNKSEMRVLTTVNYQLPLTTPIVHIEMLLEVFKRNCDGVNVDLI
LKAAINILDVSYISRTRLKDLLRYASTDDGEETLKRRCVSNHFLLAACVI
VAASYVIDSSTNDTVIEQIALITCLDESDIIIYSTILVKLALHLE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010013	XLOC_010013	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017871	TCONS_00017871	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like
IPR006671	Cyclin_N

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013763	Cyclin-like	GENE3D	1.10.472.10		coord: 33..166 e-value: 6.0E-16 score: 57.9
IPR013763	Cyclin-like	GENE3D	1.10.472.10		coord: 167..293 e-value: 4.2E-6 score: 26.3
IPR013763	Cyclin-like	SUPERFAMILY	47954	Cyclin-like	coord: 52..172
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 111..172 e-value: 7.7E-5 score: 22.4

Blast

[Close]

BLAST of TCONS_00017871-protein vs. Swiss-Prot (Human)
Match: CNTD1 (Cyclin N-terminal domain-containing protein 1 OS=Homo sapiens GN=CNTD1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.910e-18
Identity = 65/249 (26.10%), Postives = 124/249 (49.80%), Query Frame = 0

Query:   17 IGDDLITEGLKVLAEKCEKSMADLSSNRGKFNIGKAAELIFNLCQKFELPVEVKYAAIELFDQFMTIHITEL--QEIVRASSSAEKQLDWSSVEARIKDQVVLRAMTCVQIASKLVSHYKAVHPSKVKRYLSACNLHYSMSSVNKSEMRVLTTVNYQLPLTTPIVHIEMLLEVFKRN-CDGVNVDLILKAAINILDVSYISRTRLKDLLRYA---STDDGEETLKRRCVSNHFLLAACVIVAASYVIDS 259
            +  + I + L  LA++ E+++ + S   G+F   +  E +F L +++ L   V Y A+E+ ++FM      +  Q  ++   +  +  +W +++ ++ ++  LR ++CVQ+ASKL    K +    V  +L A    ++   + +SE+ VL ++N+++ L TP+ ++E LLEV   N C    + L       +  V  +     + LLR +   ST    +  K   V   F+L A  I+AAS  I +
Sbjct:   20 VATETIEDALLHLAQQNEQAVREASGRLGRFREPQIVEFVFLLSEQWCLEKSVSYQAVEILERFMVKQAENICRQATIQPRDNKRESQNWRALKQQLVNKFTLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLAYVETLLEVLGYNGCLVPAMRLHATCLTLLDLVYLLHEPIYESLLRASIENSTPSQLQGEKFTSVKEDFMLLAVGIIAASAFIQN 268

The following BLAST results are available for this feature:

BLAST of TCONS_00017871-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017871-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CNTD1	4.910e-18	26.10	Cyclin N-terminal domain-containing protein 1 OS=H...	[more]

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TCONS_00017871-protein (polypeptide) - C. hemisphaerica