TCONS_00016834-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016834-protein
Unique NameTCONS_00016834-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length174

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016834-protein ID=TCONS_00016834-protein|Name=TCONS_00016834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MPQLGKSAKMLVHINYRMRCHLQDGRLFIGTFLAFDKHMNLILGDCDEFR
KIKSKGGSEKGREEKRALGLVLLRGEHLVSMTVEAPPSKEDRNKTPAAKA
TPGAGMGRAAGRGMPTPSMGAAPAGLAGPVRGVGGPSQQAMAPPPQQYGR
GGPPPPGMMGGPPPGMRPPGNPNW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009431XLOC_009431Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016834TCONS_00016834Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 8..83
e-value: 1.4E-20
score: 84.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 12..82
e-value: 6.8E-18
score: 64.0
NoneNo IPR availableGENE3D2.30.30.100coord: 3..92
e-value: 3.7E-22
score: 77.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..174
NoneNo IPR availableCDDcd01717Sm_Bcoord: 6..84
e-value: 1.02729E-47
score: 151.164
IPR010920LSM domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..87

Blast
[Close]
BLAST of TCONS_00016834-protein vs. Swiss-Prot (Human)
Match: RSMB (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens GN=SNRPB PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.033e-54
Identity = 101/142 (71.13%), Postives = 111/142 (78.17%), Query Frame = 0 
Query:    4 LGKSAKMLVHINYRMRCHLQDGRLFIGTFLAFDKHMNLILGDCDEFRKIKSKGGSEKGREEKRALGLVLLRGEHLVSMTVEAPPSKED-RNKTPAAKATPGAGMGRAAGRGMPT-PSMGAAPAGLAGPVRGVGGPSQQAMAP 143
            +GKS+KML HI+YRMRC LQDGR+FIGTF AFDKHMNLIL DCDEFRKIK K   +  REEKR LGLVLLRGE+LVSMTVE PP K+    + P A A  G G+GRAAGRG+P    M  APAGLAGPVRGVGGPSQQ M P
Sbjct:    3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
The following BLAST results are available for this feature:
BLAST of TCONS_00016834-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSMB1.033e-5471.13Small nuclear ribonucleoprotein-associated protein... [more]
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