TCONS_00015364-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015364-protein
Unique Name	TCONS_00015364-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1149

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015364-protein ID=TCONS_00015364-protein|Name=TCONS_00015364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1149bp
MIASQTYNFSHDLDRQSVASVKKILLHPITFKDAQHADEGDQLRTKYKAL
NSNYKPGKMKSANLTNKMNDDLPQPQVVLFPEEKVELHWKESRKIGPGLV
NLGNTCFLNSVLQVLTYTPPLLNYILTGYHKKNCCASGFCMQCELTNHFL
KIARPHQQMGAIKPTPIIQKLRCIGKNFRFGRQEDAHEFLRFVIEAIQKS
EYHGRPKLDKISKETTVANAIFGGFYRSQVKCLQCQHESNTYDPIMDVNL
DIKECNSILHAFKKSVFPDRLDGDNKYFCDRCRKKTVAQKRGTIHKAPNV
LTLQLKRFDFSKMFGGKISKDIHFPEDLNIRPYMSNTKLEPVFYKLYAVL
VHSGYSCNSGHYYCYVRGSNGIWYEMNDSRVSQVSVKVVLSAQAYILFYV
KAKKTPSNLPRPLSATHSNTSPHQQLQNKQNLTYGPQKPLIGPQKPSPMK
DVPLNIDQNNKKNANSSAPYGVPVKRKPDAKISFNFQNKSNHTLTNPFVV
KKNESGKLDQSGPSKEKSFHEKKMSMTSTPFKREELAQSVNSSSSKNQSI
SSSPTKKESESNASLETSTASSQSASPKKSSKEKKSKQPPTSLNSLQKLC
ESYGDTDSSSAASSPRQKHSPPPLPSPSKESKENKTLPLVAHKTKKHSLL
HRNNPWSPTTAKNVLYPRIIVHKNHSSSTTESEPSHMKSKQEKSTCENNV
FRTVSEPSSSTLSTQNKTQNGEEILSSRSQQSPNVTSLSPRKSPKRQSLQ
DEVTDRSEATSTTPMQSSASEWNVSTNDKISIYEKKAKKKKKKRKRHHAD
SAESSPVSSQDHLHDVTVDNEHSNKKRHVSTESDLSSLTTINQSRHRKRS
HDNSNDEDAEMPSQKKKKKKKRHLDDVNDDNDEVILSPAKKKKKKKHKKR
KHLDNEEESNHDYQTKEDQTISERPHSVYNIEKHQKTKVVTEDQIEETVE
HKKKKKKKHHNRENRDYESDYTEEQEEKPVKEKAVQPPNHKKAVPVHTWD
EEKKNVNTWDGSIKSKTIDQLITNNSKVSSWDGEQDHSDLYSLKNQHEGE
RKQDDWDEDYDAGKTKKVKKQAKEESGWKKDKGNAFQKLQDYRNFSKDNK
AHFRHKNHHGDRRHSFHHHGHKKHNGGHSHHNGNKGHHSSSSKHNKTFS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008588	XLOC_008588	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015364	TCONS_00015364	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001394	Peptidase_C19_UCH
IPR018200	USP_CS
IPR028889	USP_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0016579	protein deubiquitination
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 957..977
None	No IPR available	GENE3D	3.90.70.10		coord: 89..408 e-value: 4.0E-96 score: 321.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1026..1149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 495..1003
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 408..475
None	No IPR available	CDD	cd02661	Peptidase_C19E	coord: 96..400 e-value: 2.27332E-144 score: 438.248
None	No IPR available	SUPERFAMILY	54001	Cysteine proteinases	coord: 97..401
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PFAM	PF00443	UCH	coord: 98..399 e-value: 3.8E-51 score: 173.9
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00972	USP_1	coord: 98..113
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00973	USP_2	coord: 344..362
IPR028889	Ubiquitin specific protease domain	PROSITE	PS50235	USP_3	coord: 97..402 score: 53.25

Blast

[Close]

BLAST of TCONS_00015364-protein vs. Swiss-Prot (Human)
Match: UBP42 (Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3)

HSP 1 Score: 395.586 bits (1015), Expect = 1.054e-117
Identity = 194/425 (45.65%), Postives = 271/425 (63.76%), Query Frame = 0

Query:   68 MNDDLPQPQVVLFPEEKVELHWKESRKIGPGLVNLGNTCFLNSVLQVLTYTPPLLNYILTGYHKKNCCASGFCMQCELTNHFLK-IARPHQQMGAIKPTPIIQKLRCIGKNFRFGRQEDAHEFLRFVIEAIQKSEYHGRPKLDKISKETTVANAIFGGFYRSQVKCLQCQHESNTYDPIMDVNLDIKECNSILHAFKKSVFPDRLDGDNKYFCDRCRKKTVAQKRGTIHKAPNVLTLQLKRFDFSKMFGGKISKDIHFPEDLNIRPYMSNTKLEPVFYKLYAVLVHSGYSCNSGHYYCYVRGSNGIWYEMNDSRVSQVSVKVVLSAQAYILFYVKAK--KTPSNLPRPLSATHS--NTSPHQQLQNKQNLTYGPQKPLIGPQKPS-------------PMKDVPLNIDQNNKKNANSSAPYGVPV 474
            + D +  PQ VLFP EK+ L W+++ ++G GL NLGNTCF N+ LQ LTYTPPL NY+L+  H K C A GFCM C +  H  + ++ P      IKP  +I ++R I ++FRFG QEDAHEFL++ ++A+QK+  +G  KLD+ ++ TT+   IFGG+ RS+VKCL C+  S+T+DP +D+ L+IK   S+  A ++ V P++LDG+N Y C +C+K   A KR TIH++ NVLTL LKR  F+   GGKI+KD+ +PE L+IRPYMS    EP+ Y LYAVLVH+G++C++GHY+CY++ SNG+WY+MNDS VS   ++ VLS QAY+LFY+++   K    L  P   THS   +SP   +  +           IGPQ PS             P+KD P +    +  N NSS     PV
Sbjct:   82 LGDGIAPPQKVLFPSEKICLKWQQTHRVGAGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNPGD---VIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKR--FANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIVYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIRSHDVKNGGELTHP---THSPGQSSPRPVISQRVVTNKQAAPGFIGPQLPSHMIKNPPHLNGTGPLKDTPSS--SMSSPNGNSSVNRASPV 496

The following BLAST results are available for this feature:

BLAST of TCONS_00015364-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015364-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UBP42	1.054e-117	45.65	Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo s...	[more]

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TCONS_00015364-protein (polypeptide) - C. hemisphaerica