TCONS_00015227-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015227-protein
Unique NameTCONS_00015227-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015227-protein ID=TCONS_00015227-protein|Name=TCONS_00015227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
FSLIYCKEEIFRGIFHYTKITTNMSPRDSDNESVEEMFSYNDDDEDLEYD
EGDMENAIILDENDAPELHDAMDDLDVEEDPENAEEIENGFIPDDSKMIF
QKHDGSIFCIAVSPQNNDLMVSGGEDDKGVLLKMSTDEELFELKNHKDSV
VCCGFNSDGKYVMTADMSGTIIVRNVEDGKMVWDFDCGDLEWCKWHSKAN
VIFGGTADGDIYMWKIPSGDCKIFQTHGSKSTCSILSASGKELFAGYEDG
SVKMWDLKAGTAVFQDGGDQEDPVICVTGQSNGKVFACGTNSGLIRLYNE
TGKSLTILNDISNSNEDEEKSIEGLVFQDEHYLASCSLNGKVCIWDTQTQ
RIRHEFKHTSGVSHIVWLNKSNNILAVGLDGVLKLWSLSSGSIEKELQGH
RGHVLDVQVFDNEKFVLTAGDDETCRVFEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008513XLOC_008513Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015227TCONS_00015227Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR002372PQQ_repeat
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 217..256
e-value: 0.12
score: 21.5
coord: 93..133
e-value: 0.59
score: 18.5
coord: 390..429
e-value: 1.4E-4
score: 31.2
coord: 178..215
e-value: 24.0
score: 8.3
coord: 257..299
e-value: 6.5
score: 11.9
coord: 301..346
e-value: 0.18
score: 20.9
coord: 349..387
e-value: 5.2E-4
score: 29.3
coord: 136..175
e-value: 1.8E-4
score: 30.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 395..428
e-value: 0.0091
score: 16.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 355..396
score: 9.974
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 224..265
score: 11.043
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 397..430
score: 10.275
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 93..201
e-value: 3.1E-21
score: 75.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 202..343
e-value: 1.0E-25
score: 90.2
IPR002372Pyrrolo-quinoline quinone repeatPFAMPF13360PQQ_2coord: 170..393
e-value: 8.2E-8
score: 32.0
NoneNo IPR availableGENE3D1.10.10.670coord: 344..383
e-value: 4.1E-13
score: 48.5
coord: 384..430
e-value: 1.6E-9
score: 37.0
NoneNo IPR availableCDDcd00200WD40coord: 100..387
e-value: 1.00556E-40
score: 146.711
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 243..257
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 333..347
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 100..430
score: 30.374
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 99..429

Blast
[Close]
BLAST of TCONS_00015227-protein vs. Swiss-Prot (Human)
Match: AAMP (Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 7.267e-79
Identity = 123/348 (35.34%), Postives = 191/348 (54.89%), Query Frame = 0 
Query:   93 PDDSKMIFQKHDGSIFCIAVSPQNNDLMVSGGEDDKGVLLKMSTDEELFELKNHKDSVVCCGFNSDGKYVMTADMSGTIIVRNVEDGKMVWDFDCGDLEWCKWHSKANVIFGGTADGDIYMWKIPSGDCKIFQTHGSKSTCSILSASGKELFAGYEDGSVKMWDLKAGTAVFQDGGDQ--EDPVICVTGQSNGKVFACGTNSGLIRLYNE-TGKSLTILNDISNSNEDEEKSIEGLVFQDEHYLASCS---------LNGKVCIWDTQTQRIRHEFKHTSGVSHIVWLNKSNNILAVGLDGVLKLWSLSSGSIEKELQGHRGHVLDVQVFDNEKFVLTAGDDETCRVF 428
            PDDS++ F  H  S+FC+++ P+ N L V+GGEDDK  + ++S  E LFE   HKDSV C GF+ D   V T DMSG + V  V+  + VW F+ GDLEW +WH +A V+  GTADG+ +MWK+P+GDCK FQ     +TC  +   GK    GYEDG++++WDLK G+ +    G +  + P+ CV    +G +   G+     +L +  TGK + +    + +++      E         L  CS         L+G + I+D  TQ +RH+ +H SG+  ++W   +  +    LDG+++LW   +G +  + +GH   +LD  +  +   V+T   D   +VF
Sbjct:   80 PDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWMEWHPRAPVLLAGTADGNTWMWKVPNGDCKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLKGTEGHQGPLTCVAANQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEGEESESNSVESLGFCSVMPLAAVGYLDGTLAIYDLATQTLRHQCQHQSGIVQLLWEAGTAVVYTCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 427
The following BLAST results are available for this feature:
BLAST of TCONS_00015227-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AAMP7.267e-7935.34Angio-associated migratory cell protein OS=Homo sa... [more]
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