TCONS_00015168-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015168-protein
Unique NameTCONS_00015168-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015168-protein ID=TCONS_00015168-protein|Name=TCONS_00015168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
RRSVICPSAAQMLRICVVGSGGVGKSCVTIRFLKNEFTEYYDPTMEETYE
TEITYEGKLHQVEIIDTAGQEEFTSFLDSSLSTGDAFMILYAINSLSSWN
DLKTLRSKIFHGSEGKNAGHRIPMIIVGNKKDLDNDRDTSEESAQEYADS
LRVPYIETSAKTGYNVKEAFHLIMSEIERIRPDLLVKRTKNRPSTSSDPK
KKDCRIV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008496XLOC_008496Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015168TCONS_00015168Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 13..34
score: 39.49
coord: 155..177
score: 43.22
coord: 120..133
score: 46.11
coord: 53..75
score: 39.33
coord: 36..52
score: 26.85
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 15..179
e-value: 7.2E-12
score: 32.3
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 10..180
e-value: 1.1E-57
score: 207.6
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 13..180
e-value: 2.7E-19
score: 80.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 11..75
e-value: 1.1E-18
score: 66.5
NoneNo IPR availableGENE3D3.40.50.300coord: 76..178
e-value: 9.3E-25
score: 86.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..207
NoneNo IPR availableCDDcd00876Rascoord: 14..177
e-value: 9.60901E-64
score: 196.207
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 15..178
e-value: 8.9E-46
score: 155.3
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 13..173
e-value: 6.2E-28
score: 95.6
IPR020849Small GTPase superfamily, Ras typePROSITEPS51421RAScoord: 8..207
score: 24.393
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 12..184

Blast
[Close]
BLAST of TCONS_00015168-protein vs. Swiss-Prot (Human)
Match: RAP1B (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.615e-39
Identity = 64/170 (37.65%), Postives = 108/170 (63.53%), Query Frame = 0 
Query:   14 RICVVGSGGVGKSCVTIRFLKNEFTEYYDPTMEETYETEITYEGKLHQVEIIDTAGQEEFTSFLDSSLSTGDAFMILYAINSLSSWNDLKTLRSKIFHGSEGKNAGHRIPMIIVGNKKDLDNDRDTSEESAQEYADSL-RVPYIETSAKTGYNVKEAFHLIMSEIERIRP 182
            ++ V+GSGGVGKS +T++F++  F E YDPT+E++Y  ++  + +   +EI+DTAG E+FT+  D  +  G  F ++Y+I + S++NDL+ LR +I    +  +    +PMI+VGNK DL+++R   +E  Q  A       ++E+SAK+  NV E F+ ++ +I R  P
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDD----VPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTP 170
The following BLAST results are available for this feature:
BLAST of TCONS_00015168-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAP1B4.615e-3937.65Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]
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