TCONS_00013477-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013477-protein
Unique Name	TCONS_00013477-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	424

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013477-protein ID=TCONS_00013477-protein|Name=TCONS_00013477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MTKGILIKMLNLTTTVTPDTNQFNITCNGTLVTHNTTNITCIPNNTKAVN
FPIPEYQPSVWEIVSLCFISVIVIFVNLLVILAYFNGARRLRTKTNLFVI
NLAVTDTMVGLISIPFWISSLLNFITKNHPLYKYLIILDVLFGTTSIFSL
TAISFERMFAVKYPTTHHNLNDPPFYFIIGIIWCIGILTAGIRYNFPNPV
GEKYYTLAVLIVAFLLPLVIIVCCYFMLFYTARSMMVASNQENNLSRDLR
VAKTISIIIGLFVICWLPFFTVNMCYYFGTPSLRTKMLSSIGLISATKGM
HYSNSMMNFFVYAVRSPDFRTAFKALLCSRCDKKVLRERLRTFSNAHMLL
PGSLRVQRLKTSTTSGGSGGSLTNVTTLQTTPNQSLVNLQNNSGSLSLLR
SDSGATSLLRNGKIPNNNDDNVFN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007532	XLOC_007532	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013477	TCONS_00013477	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 206..229 score: 29.36 coord: 294..320 score: 24.89 coord: 139..161 score: 33.43 coord: 61..85 score: 20.79 coord: 251..275 score: 31.97 coord: 95..116 score: 32.17
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 70..327 e-value: 3.7E-6 score: -18.7
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 77..312 e-value: 2.2E-33 score: 115.5
None	No IPR available	GENE3D	1.20.1070.10		coord: 28..365 e-value: 9.1E-60 score: 201.7
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 55..345
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 76..312 score: 27.694

Blast

[Close]

BLAST of TCONS_00013477-protein vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.544e-27
Identity = 100/358 (27.93%), Postives = 165/358 (46.09%), Query Frame = 0

Query:   43 PNNTKAVNFPIPEYQPSVWEI---VSLCFISVIVIFVNLLVILAYFNGARRLRTKTNLFVINLAVTDTMVGLISIPFWISS-LLNFITKNHPLYKYLIILDVLFGTTSIFSLTAISFERMFAVKYPTTHHN-LNDPPFYFIIGIIWCIGILTA--GIRYNFPNPVGE-----------------KYYTLAVLIVAFLLPLVIIVCCYFMLFYTARSMMVASNQEN------NLS--------------------RDLRVAKTISIIIGLFVICWLPFFTVNMCYYFGTPSLRTK---MLSSIGLISATKGMHYSNSMMNFFVYAVRSPDFRTAFKALLCSRCDKKVLRERLRTFSNAH 347
            PN + A +  + + +  VW +   + +  I + ++F N+LVI A      RL+T TN F+ +LA  D ++GL  +PF  +  L+   T  +   ++   +DVL  T SI +L  I+ +R FA+  P  + + L       II ++W +  LT+   I+ ++     +                 + Y +A  IV+F +PLVI+V  Y  +F  A+  +   ++        NLS                    ++ +  KT+ II+G F +CWLPFF VN+ +      +R +   +L+ IG         Y NS  N  +Y  RSPDFR AF+ LLC R      R  L+ + N +
Sbjct:   14 PNGSHAPDHDVTQERDEVWVVGMGIVMSLIVLAIVFGNVLVITA-IAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIG---------YVNSGFNPLIYC-RSPDFRIAFQELLCLR------RSSLKAYGNGY 354

The following BLAST results are available for this feature:

BLAST of TCONS_00013477-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013477-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADRB2	1.544e-27	27.93	Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB...	[more]

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TCONS_00013477-protein (polypeptide) - C. hemisphaerica