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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00012728-protein ID=TCONS_00012728-protein|Name=TCONS_00012728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1436bp
MTSENLSNRINTGLTCVQCSHNSKQTRTNEDTNQQTGLRSNKKFRGNRRK
RKQGIMKHSNYIFTLFIWGCIFSFHATFAYSASINVSLGFTAPLDDSYGP
LKPLGEELEAAFKIAVFTVNRIKNSPVKFRTDFKALVKDEGKNPVTDCQN
IARTFHGDSNVVGVVGAYSSSCSVAMQQELTSSKSNMPQISYRSQSMKLL
NKDTYPNFFRTSSNNKKEAQTIVDIIKHFRWTQTGMIHSDDEYYGKELSD
EIISKSKNSGIYIKERVSFSSTSSTVAIDKKLQAIKTSGSRVNIIVANGN
DFYTIVKQIKVKRMYGEGWVWIATDGATSLYVGDKADINLTTSGFIGVGP
EMYRGRTYYDFLIHWYDMADKKAYPGRIWRPGKQPSVSPYVGQVVRAVSA
FHSVLVDLANEKKIAQGTSASSIRDLVAKRLKASENVRTGLSSVMGDPIY
FNQHTEGQPKFTISNQVKGEFKEVGNWDESASPSLDLQVGKVSWPGGSSQ
IPTDKGKPGKALFRIGFVSPTNPALGNLGEYGKELLSAFRVALEVINKDD
YYQIELDGLTKDEGFDGNRSCQEIAEQMKEQNLVAVVGAYRSQCSMKMHE
VLGSEDVKMPIISYASPSVLLSNKQKYKYFFRVPPSNLYQSEIMKLIVRK
FGFKEVATLYSDEISSKEIAQRFESQMKNDSIPIIASQMFPQSSDSVKLV
DFVENIRQSGARVIFLSALPNDVAKIEQIIQEKKMAGKGWIWLGSDGATS
DHFSLNSKLASTMEGMLGVNPRRGDGAFYVKLLAKWLSKDRLTYPGIIHE
EHIEHPLPYTAQVFDAVNGIALALSDLVSRKTISHRTNALTVRAHLFTKL
EAYNSDKNGYLSALGTNKRMWFDKNKDGPLLHDVVNLGSNPPEWKHVAEF
SVDNNGKEILQDLKNPLFPGGQSVPVVGAGKVMYKIAAFFPRDTRLGALS
DLGHFWESGLKAVVNWVNKNDSLTVGFDVTYIDTGLYSSNCSSLAKKLPS
VIDIVIGAARSECTARIYEQLRERGIPVISYASTSTLLSKKTNYPNLFRL
CPSDEHQAKALSDLVEKYNWDRVGIVAAKGIYGQELSDDLSQELGIRTIG
VTNKQLYDRGSKRMTKQISKLKDSGSGVNLMITNPQDSLQLYQEAFELGM
VGKGWTWIGSDGAVSTMFTRSQNLQRAMQGMVGFRPKSGNGPLFESLYNE
WLGVDHSADRQVSYIAQVFDSVLVPTFALHELHKEKVITSRVSKIEARAH
LLRKMKSMKTLERGFHSSTGKKMHFNKFQDVAPRYELVNLNGNSWVTVGS
YEDKQLLLTNSVVWPGGTVKFPPSNPPVDPNGKKEPLKESSGTSQGLIVL
AVVFSIFGLLVIIFMLYIVRRVRYRHLYMQSDLNQGGVFSVLYGHTVNRP
GTGVRSIMQPNGNGHIKRHSLEAAVELTDPMIPRHL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000337 | GPCR, family 3 | PRINTS | PR00248 | GPCRMGR | coord: 532..547
score: 36.13
coord: 640..656
score: 32.9
coord: 621..640
score: 47.97 |
| None | No IPR available | GENE3D | 3.40.50.2300 | | coord: 234..483
e-value: 1.4E-22
score: 80.0 |
| None | No IPR available | GENE3D | 3.40.50.2300 | | coord: 936..1065
e-value: 1.1E-4
score: 22.1 |
| None | No IPR available | GENE3D | 3.40.50.2300 | | coord: 81..233
e-value: 2.6E-20
score: 72.4 |
| None | No IPR available | GENE3D | 3.40.50.2300 | | coord: 500..653
e-value: 5.4E-15
score: 55.1 |
| None | No IPR available | GENE3D | 3.40.50.2300 | | coord: 1066..1331
e-value: 5.6E-35
score: 120.7 |
| None | No IPR available | GENE3D | 3.40.50.2300 | | coord: 654..833
e-value: 2.2E-20
score: 73.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1320..1340 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 22..50 |
| None | No IPR available | CDD | cd06350 | PBP1_GPCR_family_C_like | coord: 69..365
e-value: 6.74532E-31
score: 125.176 |
| None | No IPR available | CDD | cd06269 | PBP1_glutamate_receptors_like | coord: 935..1190
e-value: 1.04681E-31
score: 126.476 |
| None | No IPR available | CDD | cd06350 | PBP1_GPCR_family_C_like | coord: 511..769
e-value: 8.44415E-32
score: 127.872 |
| IPR001828 | Receptor, ligand binding region | PFAM | PF01094 | ANF_receptor | coord: 964..1293
e-value: 5.6E-47
score: 160.5
coord: 109..399
e-value: 9.4E-38
score: 130.1
coord: 536..887
e-value: 4.7E-39
score: 134.4 |
| IPR028082 | Periplasmic binding protein-like I | SUPERFAMILY | 53822 | Periplasmic binding protein-like I | coord: 934..1316 |
| IPR028082 | Periplasmic binding protein-like I | SUPERFAMILY | 53822 | Periplasmic binding protein-like I | coord: 86..496 |
| IPR028082 | Periplasmic binding protein-like I | SUPERFAMILY | 53822 | Periplasmic binding protein-like I | coord: 513..901 |
Blast
BLAST of TCONS_00012728-protein vs. Swiss-Prot (Human)
Match: GRM3 (Metabotropic glutamate receptor 3 OS=Homo sapiens GN=GRM3 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 2.182e-18 Identity = 96/392 (24.49%), Postives = 163/392 (41.58%), Query Frame = 0
Query: 993 SLAKKLPSVIDIVIGAARSECTARIYEQLRERGIPVISYASTSTLLSKKTNYPNLFRLCPSDEHQAKALSDLVEKYNWDRVGIVAAKGIYGQELSDDLSQELGIRTIGVTNKQLYDRGSKRMTKQI---SKLKDSGSGVNLMITNPQDSLQLYQEAFELGMVGKGWTWIGSD--GAVSTMFTRSQNLQR-AMQGMVGFRPKSGNGPLFESL------YNEW--------------------------LGVDHSADRQVSYIAQVFDSVLVPTFALHELHKEKVITSRVSKIEARAHLL--RKMKSMKTLERGF------HSSTGKKMHFNKFQDVAPRYELVNLNG----NSWVTVGSYEDKQLLLTNSVVWPGGTVKFPPSNPPVDPNGKK 1334
++ + +P +I VIG + S + ++ LR IP ISYASTS LS K+ Y R P D +QAKA+++++ +NW V VA++G YG+ + QE +R I + + R + R + L+ + V ++ DS +L A +TW+ SD GA ++ S+++ A+ + +P F+SL N W L +D S Q S I V ++V ALH++ ++ + +K+ +L +K+ L+ F + + F+ F D RY + N S++ VG + + L NS+ W +V + P PN K
Sbjct: 133 AIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAA---SRANASFTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKM--QRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNFQNVGGKYSYLKVGHWAETLSLDVNSIHWSRNSVPTSQCSDPCAPNEMK 519
The following BLAST results are available for this feature:
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