TCONS_00012211-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012211-protein
Unique NameTCONS_00012211-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length972

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012211-protein ID=TCONS_00012211-protein|Name=TCONS_00012211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=972bp
XSEDFSLINRIPYSGTLNGLKYNKYTHEIITYGLSSITIWMFRTAGTILV
PRKVIRENILINDSIACMDLEKTFSENQRCFVAITTNILVFSLHTGDCLH
ELKNAHNVEISDLMFYKPLKLVVSGAKDGSIKTWVLTQNDVWQLNCLFIG
HTAKVTSLSEFPYGPCIVSSSLDGTVRTWSLDTKDEMKCQTMDYEILGIG
REQKDISFFFTFSKAVLQKWKVLNVYSPFSVLGSKAKLLRSSKYSFLPCL
STCVCEDACARIVCPVTGEIVTVLISPDYTAITDVVAIVSEELLFALLMD
GRILKVSYKTNPCTIIQTWTKESTEASASITCIALFEYHSGFEKLNKLLE
QKEDEEHGKGNREKKKIKPLEEKETRLLIGGLMNGCLVIFNWRNDKNKGC
VIFSLQAHCEEITCIAVNTGLNQLASASQDLTLKVWRIYPFASEALAPLF
MFKNHLPATNLVFAHRSLGVVYQDTTKSSYVFSMFNTKDPKKAQQIQHDM
VDDHCDVITCVDACPKLRIFATSSMDGTVRIWSNRNLLIRVIKTDDFVRS
LSFCSQRGDLLVGVGSNLNFIHHKQYLPDSYLYQMVAMVFTENEQVEPIK
IKEKNTLTPSDQNRLFRAHCSYIKFMKFLDDVPDSELERRRLEEEDKQKE
FEVLKARDEELELLRDGKLKASHKLRTKKIIKTSKKEAFEKYLDFFYNRG
PIEGPNVDEFAGDEMPFLVKMDSSYKPPVHDEGFFGIQATLDDIKKVKSN
LRKTREDDVEKRKEAERSLVKEPKMREKRSLSIAGSTIDEFKKETRNRAT
LSASTTYVERLKAFKKVRDQKDFEFCLDKLESIELEASKEYPSNESATRA
ANRKIIQRIEQTSNAHAPNNETLPVAPDGYIPNSVVVALYRELRRETKEK
PLVAWKPKELTEDQLLQIRKDTLEPVEDSPPLTPIESDESEVEEEPPKKI
FEHFTPVRVKEDISTPPPTPXR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006868XLOC_006868Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012211TCONS_00012211Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 737..757
NoneNo IPR availableGENE3D1.10.10.670coord: 130..205
e-value: 1.0E-10
score: 40.9
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 494..533
e-value: 7.4E-5
score: 32.1
coord: 141..180
e-value: 0.0012
score: 28.1
coord: 95..135
e-value: 0.017
score: 24.3
coord: 398..437
e-value: 5.7E-6
score: 35.8
coord: 535..574
e-value: 290.0
score: 1.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 402..436
e-value: 0.019
score: 15.7
coord: 146..179
e-value: 5.5E-4
score: 20.6
coord: 502..533
e-value: 3.1E-4
score: 21.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 501..533
score: 11.077
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 103..134
score: 9.94
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 148..189
score: 12.747
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 405..438
score: 10.909
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 252..872
e-value: 1.6E-24
score: 85.9
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 3..129
e-value: 1.5E-7
score: 30.4
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 103..189
score: 17.429
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 405..542
score: 10.364
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 373..539
coord: 88..184
coord: 310..337

Blast
[Close]
BLAST of TCONS_00012211-protein vs. Swiss-Prot (Human)
Match: WDR97 (WD repeat-containing protein 97 OS=Homo sapiens GN=WDR97 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.087e-63
Identity = 176/690 (25.51%), Postives = 315/690 (45.65%), Query Frame = 0 
Query:   35 SSITIWMFRTAGTILVPRKVIRE------NILINDSIACMDLEKTFSENQRCFVAITTNILVFSLHTGDCLHELKNAHNVEISDLMFYKPLKLVVSGAKDGSIKTWVLTQNDVWQLNCLFIGHTAKVTSLSEFPYGPCIVSSSLDGTVRTWSLDTKDEMKCQTMDYEILG-------IGREQKDIS---FFFTFSKAVLQKWKVLNVYSPFSVLGSK------AKLLRSSKYSFLPCLSTCVCEDACARIVCPVTGEIVTVLISPDYTAITDVVAIVSEELLFALLMDGRILKVSYKTNPCTIIQTWTKESTEASASITCIALFEYHSGFEKLNKLLEQKEDEEHGKGNREKKKIKPLEEKETRLLIGGLMNGCLVIFNWRNDKNKGCVIFSLQAHCEEITCIAVNTGLNQLASASQDLTLKVWRIYPFASEALAPLFMFKNHLPATNLVFAHRSLGVVYQDTTKSSYVFSMFNTKDPKKAQQIQHDMVDDHCDVITCVDACPKLRIFATSSMDGTVRIWSNRNLLIRVIKTDDFVRSLSFCSQRGDLLVGVGSNLNFIHHKQYLPDSYLYQMVAMVFTENEQVEPIKIKEKNTLTPSDQNRLFRAHCSYIKFMKFLDDVPDSELERRRLEEED--KQKEFEVLKARDEELELLRDGKLKASHKLRTKKIIKTSKKEAFEKYLDFFYNRG 700
            SS+ +W FR+ G  LV R             L+  ++A +          RCF A  + +L F LH    +   ++ H   ISDL + + ++ +V+ ++D ++K W   + D WQ+  +F+GHT  VT+++  P    ++S+S DGT+RTW L    ++    + +   G       +GR    +       +   + +Q W+V  +YSP + L +K      A  L +  +  LP    C C D    ++   TG IV+ L+         V   +  E L+ L   G +++ +    P +++          +    C+ L+ + +  E        +   +H    R        + K   L + G  +G L +  W + K     +F  +AH      +A+ +  N + S+  DLT+K+WR++P+A E+L+ L  F    PA  L    R +   ++D   ++Y    F   D   + ++ H   DD  D IT +  CP L+++A SS+D TVRIW+  N L+R+++ +   ++L+FCS  GDL++ +GS L  + H+ YLP SYL + +     +     P+ +  + +LT +   RL   H +     + L     S + RRR   +    +++ + + ARD +L+ LR G +  + +          ++E F+ YL   Y  G
Sbjct:  218 SSLALWQFRSGGRRLVLRGSALHPPPSPTGRLMRLAVAPVPPHHVL----RCFAAYGSAVLTFDLHAWTLVDVRRDLHKTTISDLAYCEEVEAMVTASRDSTVKVW---EAD-WQIRMVFVGHTGPVTAMTVLPNTTLVLSASQDGTLRTWDLQAAAQVGEVALGF--WGQDKLSRRVGRLLAPVRPGWPVLSLCASSMQLWRVRELYSPLAQLPAKVLHVQVAPALPAPAHQSLPTRLVCACADGSVYLLSAATGRIVSSLLLEPEDCAAAVAYCLPREALWLLTRAGHLVRANAARCPMSVLHR-VCPPPPPAPQPCCLHLYSHLTDLE--GAFSSWEIVRQHWGELRCSSVACAWKNKNRYLPVVGHTDGTLSVLEWLSSKT----VFQTEAHSPG-PVVAIASTWNSIVSSGGDLTVKMWRVFPYAEESLSLLRTFSCCYPAVALCALGRRVTAGFEDPDSATYGLVQFGLGD---SPRLDHRPQDDPTDHITGLCCCPTLKLYACSSLDCTVRIWTAENRLLRLLQLNGAPQALAFCSNSGDLVLALGSRLCLVSHRLYLPTSYLVKKMCRKAPDVVDDPPLPLMSQESLTSAQLQRLTNLHGA-ASLSEAL-----SLIHRRRATSQHLVPKEDLDAIVARDRDLQQLRLGLVVPAAQ---PPPSWQQRQEGFDNYLRLIYGSG 877
The following BLAST results are available for this feature:
BLAST of TCONS_00012211-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR971.087e-6325.51WD repeat-containing protein 97 OS=Homo sapiens GN... [more]
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