TCONS_00012173-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012173-protein
Unique NameTCONS_00012173-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length191

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012173-protein ID=TCONS_00012173-protein|Name=TCONS_00012173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
HRLFPPLKVSSAGNFVYVFKNKDCSSSCVEVSFFAGFSKLKAKMDPTAAA
ELKKKRTFKKFSFRGVDLDQLLDLSSEQLMDLVHARARRRFGRGLKMKPL
ALMKKLRKAKKEAAPMEKPAVVKTHLRNMIVLPDMIGSIVGVHNGKTFNQ
VEIKPEMIGHYLGEFSMTYKPVRHGRPGIGATHSSRFIPLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006852XLOC_006852Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012173TCONS_00012173Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002222Ribosomal_S19
IPR023575Ribosomal_S19_SF
IPR005713Ribosomal_S19A/S15e
IPR020934Ribosomal_S19_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 156..171
score: 57.26
coord: 144..156
score: 42.93
coord: 124..143
score: 40.24
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 90..174
e-value: 6.8E-35
score: 118.7
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 87..180
score: 21.774
IPR023575Ribosomal protein S19, superfamilyGENE3D3.30.860.10coord: 87..183
e-value: 1.1E-39
score: 133.8
IPR023575Ribosomal protein S19, superfamilySUPERFAMILY54570Ribosomal protein S19coord: 95..175
IPR005713Ribosomal protein S19A/S15eTIGRFAMTIGR01025TIGR01025coord: 58..191
e-value: 1.3E-65
score: 217.2
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 144..168

Blast
[Close]
BLAST of TCONS_00012173-protein vs. Swiss-Prot (Human)
Match: RS15 (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 1.238e-74
Identity = 113/144 (78.47%), Postives = 129/144 (89.58%), Query Frame = 0 
Query:   48 AAAELKKKRTFKKFSFRGVDLDQLLDLSSEQLMDLVHARARRRFGRGLKMKPLALMKKLRKAKKEAAPMEKPAVVKTHLRNMIVLPDMIGSIVGVHNGKTFNQVEIKPEMIGHYLGEFSMTYKPVRHGRPGIGATHSSRFIPLK 191
            A  E KKKRTF+KF++RGVDLDQLLD+S EQLM L  AR RRR  RGL+ K  +L+K+LRKAKKEA PMEKP VVKTHLR+MI+LP+M+GS+VGV+NGKTFNQVEIKPEMIGHYLGEFS+TYKPV+HGRPGIGATHSSRFIPLK
Sbjct:    2 AEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
The following BLAST results are available for this feature:
BLAST of TCONS_00012173-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS151.238e-7478.4740S ribosomal protein S15 OS=Homo sapiens GN=RPS15... [more]
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