TCONS_00011825-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011825-protein
Unique Name	TCONS_00011825-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	531

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011825-protein ID=TCONS_00011825-protein|Name=TCONS_00011825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp
MIARASSSLHGIRKGYDISIPLIPKDYPIKSIPILDKDVTLLPLHRKYLM
SFKGKRYLYGIGSMSRNSLYLIRNKKFVLLTTCRHGKGWERYKDERCDTD
NEEYDRYDYNELLRNSTFCLIPRGRRLGSFRFLESMKYGCIPVLLSNGWD
LPFKDLIDWSKFSLNIDERTLLQLPTIIEGLSEQMILSMRQQTLFVYQTY
FSSVTSILETMLEEVRERVIQDFKRPYRVWNQMPGALKVDTSFSSSVSRL
PFYGSLSNDVQRFTAIILAVSTIHRSSAALFRLIQSINMSKYVDQILVIW
LSSSAVPPRNKWPKTKVSLRVVHPPKRSMNARYINMDLIKTDAIFSFDED
VIVNNAEIDFAFSVWLSNPDRLVGFTARSHLYDTTSNSEPSWKYTSKKMN
SYSIIQTSNAVFHRYYSHHYSKRLPNQLQEMVNQHSTCESLTMNFLISSL
TNKSPIKVTTSSHFKPGSVTKERLGSTFTPESHFATMQKCFDVLVNVFGH
VPLVWSKVAMNPVLYRDPVSIVRKKYKKLES

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006643	XLOC_006643	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011825	TCONS_00011825	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029044	Nucleotide-diphossugar_trans
IPR015338	EXT_C
IPR004263	Exostosin

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016757	transferase activity, transferring glycosyl groups

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 522..531
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 264..524 e-value: 1.2E-38 score: 132.7
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 272..516
IPR015338	Exostosin , C-terminal	PFAM	PF09258	Glyco_transf_64	coord: 263..515 e-value: 1.4E-69 score: 234.0
IPR004263	Exostosin-like	PFAM	PF03016	Exostosin	coord: 5..179 e-value: 3.0E-36 score: 125.1

Blast

[Close]

BLAST of TCONS_00011825-protein vs. Swiss-Prot (Human)
Match: EXT1 (Exostosin-1 OS=Homo sapiens GN=EXT1 PE=1 SV=2)

HSP 1 Score: 473.011 bits (1216), Expect = 5.938e-160
Identity = 234/533 (43.90%), Postives = 353/533 (66.23%), Query Frame = 0

Query:    1 MIARASSSLHGIRKGYDISIPLIPKDYPIKSIPILDKDVTLLPLHRKYLMSFKGKRYLYGIGSMSRNSLYLIRN-KKFVLLTTCRHGKGWERYKDERCDTDNEEYDRYDYNELLRNSTFCLIPRGRRLGSFRFLESMKYGCIPVLLSNGWDLPFKDLIDWSKFSLNIDERTLLQLPTIIEGLSEQMILSMRQQTLFVYQTYFSSVTSILETMLEEVRERVIQDFKRPYRVWNQMPGALKVDTSFSSSVSRLP-FYGSLS-NDVQRFTAIILAVSTIHRSSAALFRLIQSINMSKYVDQILVIWLSSSAVPPRNKWPKTKVSLRVVHPPKRSMNARYINMDLIKTDAIFSFDEDVIVNNAEIDFAFSVWLSNPDRLVGFTARSHLYDTTSNSEPSWKYTSKKMNSYSIIQTSNAVFHRYYSHHYSKRLPNQLQEMVNQHSTCESLTMNFLISSLTNKSPIKVTTSSHFKPGSVTKERLGSTFTPESHFATMQKCFDVLVNVFGHVPLVWSKVAMNPVLYRDPVSIVRKKYKKLE 530
            M+A+AS S    R  +D+SIPL  KD+P             +P  RKY++ FKGKRYL GIGS +RN+LY + N +  VLLTTC+HGK W+++KD RCD DN EY++YDY E+L N+TFCL+PRGRRLGSFRFLE+++  C+PV+LSNGW+LPF ++I+W++ ++  DER LLQ+P+ I  + +  IL++RQQT F+++ YFSSV  I+ T LE +++R+ +   R   +WN+ PG L V   +SS +   P +Y +L      +FTA+I AV+ +   S  + +L+ +   S+Y  QI+V+W     +P +++WP T V + V+    + M++R++  D I TDA+ S DED +++  E+DFAF+VW S P+R+VG+ ARSH +D   NS+  W YTSK  N YS++ T  A++H+YY + YS  LP  L+ MV+Q + CE + MNFL+S++T   PIKVT    +K   + +    S +    HFA  Q C +   + FG++PL+ S++ ++PVL++D VSI+RKKY+ +E
Sbjct:  215 MLAKASISTENFRPNFDVSIPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYANLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRWPATAVPVVVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWD---NSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYSHYLPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGYMPLIHSQMRLDPVLFKDQVSILRKKYRDIE 744

The following BLAST results are available for this feature:

BLAST of TCONS_00011825-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011825-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EXT1	5.938e-160	43.90	Exostosin-1 OS=Homo sapiens GN=EXT1 PE=1 SV=2	[more]

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TCONS_00011825-protein (polypeptide) - C. hemisphaerica