TCONS_00011678-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011678-protein
Unique NameTCONS_00011678-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1038

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011678-protein ID=TCONS_00011678-protein|Name=TCONS_00011678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1038bp
MKLPLFTLVFLALLGNLSVVTCFNIDLNNSFIYSGKQPGSFFGYSLAISK
ELNAIIVGAPKGNEYKKSEVVTQNDNWGSVYSCVVTPGSTDCELLNKVDD
ITKVQNNPGKKDQWMGATVYSDHKNVLSCAPRFNIPNTINNEIYYTGKCD
FFNAISKSNFKDYEFKPCEQVARSGENGAKSHGMCEAGFSANIIPVGNDM
NVGTGLFTTHNDKGEIFEKVAMSDDDGKKKKIAPTTDLGFFDYMGYAITT
GKFKKDKGIFIVGGAPRGNQLKGKVIMYDSANPNLIKFSSQILSPSEQVG
SYFGASLGAADINGDGFSDLVVGAPHYANTRPNQGAIFVYLNDQNDGLKF
TDQQFYGTYEDGFFGYSIGSVGDLNKDGKDDIAVGAPWAGDNNEGVVYLY
YGTGKDGQPLAQKQIIMPKDIKGGASFLGFGFSFADFYQYSTDPGHHNDL
DENKYNDLAIGAFKSGHVALLRARPVVTIKGELKTDGKPKIDLSSKDPNT
ICKFKGTDFKCIKGAKVCFQVEQQEDDPQNVKYSIEVDAQTDVKREKRGF
LADKNGDQVYQIDEIVSAVGKAEKCTSPFDIFIKNNTKNVLNAFRVTLKW
EYEAACKDNDICPVSNKMEVLTIPYDFPYLKGCSDDGNEECNVDLQLTME
GVVSSGGKNILLGVTKTVTLVVDVKNVGENSFLNTLKVTYPKKQVSPNKV
TIASYVGLVEWLPGDTEDSDIKSVIVTLSSPIKQNGIDKVSIVFSVLNVG
RGKDVVFNANVTTQSTEMKPADNVARVDLPVTLNANLTVSGSVKPENVKW
EKGVASLNKVGPTVTHTFYFQNMGPSAAEESDVLIKIPEKMGGNYILNIV
KVTLIPGIGYKDDIGKCEQGTLNPLNLDLSQMNITRRRRRREVSAPVIVD
CGSNTGCMIINCKLNRLGKSQNAQVTVTSTLVEATFDKLKESRQVVAFAK
FSSEFVKRARGAEPDEVNVPLNVNTPYLKVEKQGEPIAWWIILLCILGAV
LIIGLIVFILYKKGFFKRKKHGEEEEEGLRKGDPDDDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006554XLOC_006554Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011678TCONS_00011678Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000413Integrin_alpha
IPR013519Int_alpha_beta-p
IPR013649Integrin_alpha-2
IPR013517FG-GAP
IPR018184Integrin_alpha_C_CS
IPR032695Integrin_dom
Vocabulary: Cellular Component
TermDefinition
GO:0008305integrin complex
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0008305 integrin complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000413Integrin alpha chainPRINTSPR01185INTEGRINAcoord: 363..387
score: 54.24
coord: 260..271
score: 41.67
coord: 296..316
score: 53.43
coord: 999..1018
score: 48.41
coord: 241..253
score: 35.65
IPR013519Integrin alpha beta-propellorSMARTSM00191int_alpha_rptcoord: 240..294
e-value: 0.075
score: 22.2
coord: 299..357
e-value: 4.9E-11
score: 52.7
coord: 426..487
e-value: 150.0
score: 1.7
coord: 38..99
e-value: 0.004
score: 26.4
coord: 360..416
e-value: 9.1E-12
score: 55.1
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 28..82
score: 7.825
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 416..488
score: 8.208
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 351..409
score: 12.868
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 101..161
score: 5.635
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 289..349
score: 14.272
IPR013649Integrin alpha-2PFAMPF08441Integrin_alpha2coord: 473..889
e-value: 1.8E-45
score: 155.6
IPR013517FG-GAP repeatPFAMPF01839FG-GAPcoord: 303..340
e-value: 1.7E-11
score: 43.9
coord: 364..400
e-value: 2.0E-8
score: 34.1
NoneNo IPR availableGENE3D1.20.5.930coord: 983..1020
e-value: 4.6E-11
score: 41.8
NoneNo IPR availableGENE3D2.60.40.1530coord: 785..969
e-value: 8.5E-25
score: 86.8
NoneNo IPR availableGENE3D2.130.10.130coord: 23..476
e-value: 2.1E-77
score: 260.3
NoneNo IPR availableGENE3D2.60.40.1460coord: 477..641
e-value: 6.0E-11
score: 42.5
NoneNo IPR availableGENE3D2.60.40.1510coord: 642..784
e-value: 9.9E-15
score: 54.4
NoneNo IPR availableSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 23..474
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved sitePROSITEPS00242INTEGRIN_ALPHAcoord: 1011..1018
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 639..775
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 785..992
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 475..634

Blast
[Close]
BLAST of TCONS_00011678-protein vs. Swiss-Prot (Human)
Match: ITA8 (Integrin alpha-8 OS=Homo sapiens GN=ITGA8 PE=1 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 5.784e-64
Identity = 280/1087 (25.76%), Postives = 485/1087 (44.62%), Query Frame = 0 
Query:   23 FNIDLNNSFIYSGKQPGSFFGYSLAIS---KELNAIIVGAPKGNEYKKSEVVTQNDNWGSVYSCVV-TPGSTDCELLN-KVDDITKVQNNPGKK------DQWMGATVYSDHKNVLSCAPRFNI----PNTINNEIYYTGKCDFFNAISKSNFKDY-EFKPCEQVARSGENGAKSHGMCEAGFSANIIPVGNDMNVGTGLFTTHNDKGEI-------------FEKVAMSDDDGKKKKIAPTTDLGFFD--YMGYAITTGKFKKDKGIFIVGGAPRGNQLKGKVIMYDSANPNLIKFSSQILSPSEQVGSYFGASLGAADINGDGFSDLVVGAPHYAN----TRPNQ-GAIFVYLNDQNDGLKFTDQQFY-GTYEDGFFGYSIGSVGDLNKDGKDDIAVGAPWAGDNNEGVVYLYYGTGKDGQPLAQKQIIMPKDIKGGASFLGFGFSFADFYQYSTDPGHHNDLDENKYNDLAIGAFKSGHVALLRARPVVTIKGELKTDGKPKIDLSSKD---PNTICKFKGTDFKCIKGAKVCFQVEQQEDDPQNVKYS-IEVDAQTDVKREKRGFLADKNGDQVYQIDEIVSAVGKAEKCTSPFDIFIKNNT--KNVLNAFRVTLKWEY-EAACKDN-DICPVSNKMEVLTIPYDFPYLKGCSDDGNEECNVDLQLTMEGVVSSGGKNILLGVTKTVTLVVDVKNVGENSFLNTLKVTYPKKQVSPNKVTIASYVGLVE----WLPGDTE---DSDIKSVIVTLSSPIKQNGIDKVSIVFSVLNVGRGKDVVFNANVTTQSTEM-KPADNVARVDLPVTLNANLTVSGSVKPENV-----KW--EKGVASLNKVGPTVTHTFYFQNMGPSAAEESDVLIKIPEKMGGNYILNIVKVTLI--------PGIGYKDDIGKCEQGTLNPLNLDLSQMNITRRRRRREV--------SAPVIVDCGSNTGCMIINCKLNRLGKSQNAQVTVTSTLVEATFDKLKESRQVVAFAKFSSEFVKRA----RGAEPDEVNVPLNVN----TPYLKVEKQGEPIAWWIILLCILGAVLIIGLIVFILYKKGFFKRKKHGEEE 1025
            FN+D+    +YSG + GS+FGY++          +++VGAPK N  +   V       G+VY C     GS  C  +     +  K++ N  K+      +QW GATV +    V++CAP ++     P    + +   G C     ++  NF  Y EF PC    R+     +  G C+AGFS +    G+ +  G G F     +G++             F+ +       K+ ++AP +    +D  Y+GY++  G+F  D    +V G PRG Q  G V + +S +   I+  +      EQ+ SYFG ++  +D+N DG  D++VGAP +      + P + G I++YL  Q   L F D Q   GT   G FG ++  +GDLN+DG +DIA+G P+AG +  G V +Y G  KDG      Q++        A   GFGF+              +D+D+N Y DL +GAF +G VA+ RARPVVT+  +L       I+L +K    P+++     T   C    +VC  V  Q      V  + +++D+       KR    D +  Q +++  +V    K+ +C   F +++++ T  ++ L+   ++L +   E+  K+  ++ P+ N      +      L  C +D    C  DL+L+           +++G    + L+++ +N GE ++   L V  P++         A YVG+      + P   E   ++  + V+  L +P+       + + F+V  + +  ++  N ++  +S+    P  N   + + +T  A + + G   P  +      W  E+      +VGP V H +   N+GPS   ++ + +  P      ++L I  +  +        P I  +D            L+  L    I    R+R+V        S   I++C +N  C+ I+C + RL   ++A + V S L   TF  L+      A A   S  VK+     + A+  E ++ +  +    TP +        I  W+I+L IL  +L++ ++   L+K GFF R +  +E+
Sbjct:   39 FNLDVEKLTVYSGPK-GSYFGYAVDFHIPDARTASVLVGAPKANTSQPDIV-----EGGAVYYCPWPAEGSAQCRQIPFDTTNNRKIRVNGTKEPIEFKSNQWFGATVKAHKGKVVACAPLYHWRTLKPTPEKDPV---GTC----YVAIQNFSAYAEFSPC----RNSNADPEGQGYCQAGFSLDFYKNGDLIVGGPGSFYW---QGQVITASVADIIANYSFKDILRKLAGEKQTEVAPAS----YDDSYLGYSVAAGEFTGDSQQELVAGIPRGAQNFGYVSIINSTDMTFIQNFT-----GEQMASYFGYTVVVSDVNSDGLDDVLVGAPLFMEREFESNPREVGQIYLYL--QVSSLLFRDPQILTGTETFGRFGSAMAHLGDLNQDGYNDIAIGVPFAGKDQRGKVLIYNGN-KDGLNTKPSQVLQ-GVWASHAVPSGFGFTLRG----------DSDIDKNDYPDLIVGAFGTGKVAVYRARPVVTVDAQLLLHPM-IINLENKTCQVPDSM-----TSAACF-SLRVCASVTGQSIANTIVLMAEVQLDSLKQKGAIKRTLFLDNH--QAHRVFPLVIKRQKSHQCQD-FIVYLRDETEFRDKLSPINISLNYSLDESTFKEGLEVKPILNYYRENIVSEQAHILVDCGEDN--LCVPDLKLSAR----PDKHQVIIGDENHLMLIINARNEGEGAYEAELFVMIPEE---------ADYVGIERNNKGFRPLSCEYKMENVTRMVVCDLGNPMVSGTNYSLGLRFAVPRLEK-TNMSINFDLQIRSSNKDNPDSNFVSLQINITAVAQVEIRGVSHPPQIVLPIHNWEPEEEPHKEEEVGPLVEHIYELHNIGPSTISDTILEVGWPFSARDEFLLYIFHIQTLGPLQCQPNPNINPQDIKPAASPEDTPELSAFLRNSTIPHLVRKRDVHVVEFHRQSPAKILNC-TNIECLQISCAVGRLEGGESAVLKVRSRLWAHTF--LQRKNDPYALASLVSFEVKKMPYTDQPAKLPEGSIVIKTSVIWATPNVSFS-----IPLWVIILAILLGLLVLAILTLALWKCGFFDRARPPQED 1048
The following BLAST results are available for this feature:
BLAST of TCONS_00011678-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITA85.784e-6425.76Integrin alpha-8 OS=Homo sapiens GN=ITGA8 PE=1 SV=... [more]
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