TCONS_00011585-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011585-protein
Unique Name	TCONS_00011585-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1086

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011585-protein ID=TCONS_00011585-protein|Name=TCONS_00011585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1086bp
MATAELENILKQLLVPDNQTIQKATLQLKAAFKNPDVVIPSLVELLQKSD
DATIRQYCAILLRRRVVKQWKKINNDTKIRLRQLLLDSITKEPVTFVRMS
ICQVAGSIARHDIPSNTWPELLQFISQCVQSIVVAEREVGFLLLSSICES
AAEELKPVYKDLFPAFGIGLNDGDSVTNPFIAIKCMIPLLMYFGTDEEML
LKPMLGQVLNIIQALVKVDEEKASEALDFFDELVQIEVGIIVPYVKDLVQ
FCMQIMGCSDLSDGLRVKALYLICWACRRKSKTLMKSKLLQPLVKLLLSL
MANPEDEEDEDTPEGDEMNNLQSVAGQALDLLALHTPPNKIIPILMAELG
PLFQSTNIFERKAAYIGLGELAEGCADYIRTKHLQNAIETTMKGLTDESV
IVRNAALFALGQYSEHVQPEVGKFHSQVLPALLQFLQTVIGDENAAVNHR
GTVTKLFYAIEKFTEGLEKEVIVPYTEGLMQAYITLLEMKKDSHTSELAI
SAIGALVASAQEHLTTFFPLIMQHLQNVLSQPLTLETMDIHAQTVDTLGA
IARYISPEAFLPKAAECMQFGLSMLESCEDPDLRRCTYGLFASISVVLKQ
NMEQYLPTIFPMMILSLKSNEGIVANYGDGNQDPSFLIEDDCDEEETPGG
ESKEMNDDDDDEDEDIAGYSVENAYMDEKEDTINSLAEIAENVGKGVSDY
FEEIFKEIFLLVDYPHANVRKASTTAGIRLCIVLYKILKKNNPTADLSPV
HSCLSRSLPTAINTINQDDDRYVVLACLEVLEELFKVLKGDAFPEKNHVV
EFNNALMNVFKGKTHCQEFGEDDESSTSEGDEESQAELDQMLIEKTGDLL
PQLAQAMGGAQFQNYFTAFLPEMMKRTRKNSNVAERSFAAGTIAEIIQGM
GGAISTFVQPITPWLLGLLQDADPEVRSNASFALGVLAENGGEAVISLYT
NILQALFGLLNQGQPALVQDNLCGAVARMIMTSPQALPLDQVLPVLVNCL
PIQEDERENETVTKCFMKIYEANSTILTPFMEKLISWFVNSVNSPQSGLE
QETRGQVKLVVADIHQKFPNETNQIMTSLNLSTDGW

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006490	XLOC_006490	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011585	TCONS_00011585	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001494	Importin-beta_N
IPR011989	ARM-like
IPR012583	RIX1_N
IPR000357	HEAT
IPR021133	HEAT_type_2
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0008536	Ran GTPase binding
GO:0005515	protein binding
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008536	Ran GTPase binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001494	Importin-beta, N-terminal domain	SMART	SM00913	IBN_N_2	coord: 24..91 e-value: 4.5E-7 score: 39.5
IPR001494	Importin-beta, N-terminal domain	PFAM	PF03810	IBN_N	coord: 24..90 e-value: 8.2E-6 score: 25.6
IPR001494	Importin-beta, N-terminal domain	PROSITE	PS50166	IMPORTIN_B_NT	coord: 24..91 score: 11.296
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 661..1082 e-value: 4.8E-45 score: 153.6 coord: 2..627 e-value: 5.7E-89 score: 298.8
IPR012583	Pre-rRNA-processing protein RIX1, N-terminal	PFAM	PF08167	RIX1	coord: 915..1044 e-value: 2.1E-6 score: 27.5
IPR000357	HEAT repeat	PFAM	PF02985	HEAT	coord: 915..940 e-value: 2.2E-4 score: 21.1
None	No IPR available	PFAM	PF13513	HEAT_EZ	coord: 360..412 e-value: 1.2E-5 score: 25.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 637..665
None	No IPR available	CDD	cd00020	ARM	coord: 869..980 e-value: 0.00220972 score: 36.9088
IPR021133	HEAT, type 2	PROSITE	PS50077	HEAT_REPEAT	coord: 911..947 score: 9.871
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 640..1070
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 4..624 coord: 679..790

Blast

[Close]

BLAST of TCONS_00011585-protein vs. Swiss-Prot (Human)
Match: IPO4 (Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2)

HSP 1 Score: 571.237 bits (1471), Expect = 0.000e+0
Identity = 369/1020 (36.18%), Postives = 587/1020 (57.55%), Query Frame = 0

Query:   16 PDNQTIQKATLQLKAAFKNPDVVIPSLVELLQKSDDATIRQYCAILLRRRVVKQWKKINNDTKIRLRQLLLDSITKEPVTFVRMSICQVAGSIARHDIPSNTWPELLQFISQCVQSIVVAEREVGFLLLSSICESAAEELKPVYKDLFPAFGIGLNDGDSVTNPFIAIKCMIPLLMYFGTDEEMLLKPMLGQVLNIIQALVKVDEEKASEALDFFDELVQIEVGIIVPYVKDLVQFCMQIMGCSDLSDGLRVKALYLICWACRRKSKTLMKSKLLQPLVKLLLSLMANPE-----DEEDEDTPEGDEM-----NNLQSVAGQALDLLALHTPPNKIIPILMAELGPLFQSTNIFERKAAYIGLGELAEGCADYIRTKHLQNAIETTMKGLTDESVIVRNAALFALGQYSEHVQPEVGKFHSQVLPALLQFLQTVIGDENAAVNHRGTVTKLFYAIEKFTEGLEKEVIVPYTEGLMQAYITLLEMKKDSHTSELAISAIGALVASAQEHLTTFFPLIMQHLQNVLSQPLT--LETMDIHAQTVDTLGAIARYISPEAFLPKAAECMQFGLSMLESCEDPDLRRCTYGLFASISVVLKQNMEQYLPTIFPMMILSLKSNEGIVANYGDGNQDPSFLIEDDCDEEETPGGESKEMNDDDDDEDEDIAGYSVENAYMDEKEDTINSLAEIAENVGKGVSDYFEEIFKEIFLLVDYPHANVRKASTTAGIRLCIVLYKILKKNNPTADLSPVHSCLSRSLPTAINTINQDDDRYVVLACLEVLEELFKVLKGDAFPEKNHVVEFNNALMNVFKGKTHCQEFGEDDESSTSEGDEESQAELDQMLIEKTGDLLPQLAQAMGGAQFQNYFTAFLPEMMKRTRKNSNVAERSFAAGTIAEIIQGMGGAISTFVQPITPWLLGLLQDADPEVRSNASFALGVLAENGGEAVISLYTNILQALFGLLNQGQPALVQDNLCGAVARMIMTSPQALPLDQVLPVLVNCLPIQEDERENETVTKCFMKIYEAN 1023
            PD + I++AT QL+   + P   +P+L +LL  + D  IRQ+ A+L RRR+  +W+++  + +  L+ L+L ++ +E    V +S+ Q++ +I R +     WP+LLQ +     S    ERE+G LLLS +  S  E  +P +++L       L +  S    F +++ +  +  Y  T++  L + ++ +++  +Q L+ +DE KA EAL+  DEL++ EV +I PY+ +++ FC+++     L + +R++ L  + +  + KSK L+K++LL PL+  L  ++A        D ED+D+ E +          +  A Q +D+LALH PP K+ P LM  L    +S + ++RKA  + L  L++G  D+IR + L   ++   KGL D S +VRNAALFALGQ+SE++QP +  +  +V+P LL +L++V       + H   + K  YA+E F E L  +V  PY   LM+  + LL         ELA+SA+GA+  +AQ  L  +FP IM+HL+  L   LT   +   +  Q+++TLG +AR +  E   P A EC Q GL + +  +DPDLRRCTY LFA++S ++ + +  +L  I  +M+LSL+S EGIV  Y DG+   SFL+ DD  + E    E     D ++++D +I+GYSVENA+ DEKEDT  ++ EI+ N       Y E +F+E+F L++ PH NVRKA+  A  + C  L+K  +      + + + + L+R +P+ +  +N++ +R VV+A LE L  + +            + E    L  V + KT CQ     D     E +++ QAE D ML+E  G+ +P LA A GG  F  +F  FLP ++ +T++   VAE+SFA GT+AE IQG+G A + FV  + P LL   Q+ADPEVRSNA F +GVLAE+GG      +  +L  LF LL + +   V+DN+CGA+AR++M SP   P  QVL  L++ LP++ED  E  T+ + F  +Y+++
Sbjct:   16 PDTERIRRATEQLQIVLRAP-AALPALCDLLASAADPQIRQFAAVLTRRRLNTRWRRLAAEQRESLKSLILTALQRETEHCVSLSLAQLSATIFRKE-GLEAWPQLLQLLQHSTHSPHSPEREMGLLLLSVVVTSRPEAFQPHHRELLRLLNETLGEVGSPGLLFYSLRTLTTMAPYLSTEDVPLARMLVPKLIMAMQTLIPIDEAKACEALEALDELLESEVPVITPYLSEVLTFCLEVARNVALGNAIRIRILCCLTFLVKVKSKALLKNRLLPPLLHTLFPIVAAEPPPGQLDPEDQDSEEEELEIELMGETPKHFAVQVVDMLALHLPPEKLCPQLMPMLEEALRSESPYQRKAGLLVLAVLSDGAGDHIRQRLLPPLLQIVCKGLEDPSQVVRNAALFALGQFSENLQPHISSYSREVMPLLLAYLKSV------PLGHTHHLAKACYALENFVENLGPKV-QPYLPELMECMLQLLRNPSSPRAKELAVSALGAIATAAQASLLPYFPAIMEHLREFL---LTGREDLQPVQIQSLETLGVLARAVG-EPMRPLAEECCQLGLGLCDQVDDPDLRRCTYSLFAALSGLMGEGLAPHLEQITTLMLLSLRSTEGIVPQY-DGSS--SFLLFDDESDGEE--EEELMDEDVEEEDDSEISGYSVENAFFDEKEDTCAAVGEISVNTSVAFLPYMESVFEEVFKLLECPHLNVRKAAHEALGQFCCALHKACQSCPSEPNTAALQAALARVVPSYMQAVNRERERQVVMAVLEALTGVLRSCGTLTLKPPGRLAELCGVLKAVLQRKTACQ-----DTDEEEEEEDDDQAEYDAMLLEHAGEAIPALAAAAGGDSFAPFFAGFLPLLVCKTKQGCTVAEKSFAVGTLAETIQGLGAASAQFVSRLLPVLLSTAQEADPEVRSNAIFGMGVLAEHGGHPAQEHFPKLLGLLFPLLARERHDRVRDNICGALARLLMASPTRKPEPQVLAALLHALPLKEDLEEWVTIGRLFSFLYQSS 1012

The following BLAST results are available for this feature:

BLAST of TCONS_00011585-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011585-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IPO4	0.000e+0	36.18	Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2	[more]

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TCONS_00011585-protein (polypeptide) - C. hemisphaerica