TCONS_00011502-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011502-protein
Unique NameTCONS_00011502-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011502-protein ID=TCONS_00011502-protein|Name=TCONS_00011502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=825bp
MPTIKEEILDNSYENGNSFSMENNQCSRKFSCSSNESSMSSSSSDYVFEQ
QFINSVIIPNSKDGEISRPPSQGSVLSTGASEVKLSDQQQTKIQNILESV
KALSDAEKFFFYLKLPQKEQQQSASLSNSKWEQTQAFQWIRNNLEECDSS
VNLPKHEVYDEYKIFCEQKGNKRFLSAPDFGKIVKCMFPNVKARRLGTRG
NSKYCYNGLRRKIRLKEETNGENDSSQLSSPICEEVESAEQTFTAACKVV
CEWANKLLGRCFETLLDLAKFLVNGSYVSTKSMPALVVMSATQDCFNQIN
QRLSLQKLTKPGQQQQQQQQQQQSQNNTNHYNSRVEDICTPSKTVMGHVR
NKQPNNTQHPQQNSQHPQQNSLQMQQQQQSPFQMKNNMISTTTLHTQNPT
GNINLNEITIGQTQSSSSHIFTNENTQQTQDSALVTPNTPTKSNANHMSN
INIHIKEESSNPSDPSYQPHTPPLTPKRDEKHAQQQVAQSPTVKTPRKVG
RPPKNTPKKNKTSSSPYASPVSRSKQSGMPAANVALPHHQPNMMGFTNPL
HNDFRSRYNWTVPGGSFTPNTHPHQPRMHPVPSSQNHQITQNQPLSLPPQ
QILYNNNNHQQQIQHPSQQFGPFPQQQQQLTDNHHDKELQNIFMNGGGGA
APQIPPQTPPQHNQMINLNTRCQSVPVTHQQPINNQAYNPLTPQLHRMTT
QQDHTMNAKRNLNFMFETPRNPTQLQNERLLNNTQILPQNSNHDHLVPSG
NTLPGLQQQNGSNQLYDLAFPLNDLSTPEELEDIPSLDNIDSDDLIKSLN
KTNGGDGNAWVNDWSNATMPVMNVT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006441XLOC_006441Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011502TCONS_00011502Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003150DNA-bd_RFX
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003150DNA-binding RFX-type winged-helix domainPFAMPF02257RFX_DNA_bindingcoord: 134..212
e-value: 1.6E-26
score: 92.7
IPR003150DNA-binding RFX-type winged-helix domainPROSITEPS51526RFX_DBDcoord: 136..213
score: 24.904
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 136..213
e-value: 1.0E-26
score: 92.8
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 137..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 565..592
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 307..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 346..381
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 426..540

Blast
[Close]
BLAST of TCONS_00011502-protein vs. Swiss-Prot (Human)
Match: RFX7 (DNA-binding protein RFX7 OS=Homo sapiens GN=RFX7 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.786e-45
Identity = 87/182 (47.80%), Postives = 117/182 (64.29%), Query Frame = 0 
Query:  126 LSNSKWEQTQAFQWIRNNLEECDSSVNLPKHEVYDEYKIFCEQKGNKRFLSAPDFGKIVKCMFPNVKARRLGTRGNSKYCYNGLRRKIRLKEET------NGENDSSQLSSPICEEVESAEQTFTAACKVVCEWANKLLGRCFETLLDLAKFLVNGSYVSTKSMPALVVMSATQDCFNQINQ 301
            +S+S+ +Q  AF WIRN LEE     +LPK EVYDEYK +C+  G    LSA DFGKI+K +FPN+KARRLGTRG SKYCY+GLR+K  +   T      +   D  + + P  +     E+  ++AC++VCEWA K+L + F+T+L+LA+FLV   Y+ TKSM AL VM+A       I Q
Sbjct:    1 MSSSRAQQMHAFSWIRNTLEE-HPETSLPKQEVYDEYKSYCDNLGYHP-LSAADFGKIMKNVFPNMKARRLGTRGKSKYCYSGLRKKAFVHMPTLPNLDFHKTGDGLEGAEPSGQLQNIDEEVISSACRLVCEWAQKVLSQPFDTVLELARFLVKSHYIGTKSMAALTVMAAAPAGMKGITQ 180
The following BLAST results are available for this feature:
BLAST of TCONS_00011502-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFX75.786e-4547.80DNA-binding protein RFX7 OS=Homo sapiens GN=RFX7 P... [more]
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