TCONS_00011396-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011396-protein
Unique NameTCONS_00011396-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011396-protein ID=TCONS_00011396-protein|Name=TCONS_00011396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MGKKSKKSNKLESLKAAIEEEENKEEEVKEDEPKLVKKRKGKKDVAAKMK
NLELGEDRGAEQCFDYDSEEETEEPDYAAETEDTGVKMSRKEKKKAAKQA
KYAAEQAAMENESQFSVSQQEQTSKAAAIENATDIKVEKFSIAARGKDLF
VNADLTIAQGRRYGLVGPNGMGKTTLLVHIARRLIKIPPNIDVLLCEQDI
QVDETPAVDMVLKADKKRLELLAEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006390XLOC_006390Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011396TCONS_00011396Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003439ABC_transporter-like
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..31
NoneNo IPR availableGENE3D3.40.50.300coord: 87..223
e-value: 9.5E-14
score: 50.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..92
IPR003439ABC transporter-likePFAMPF00005ABC_trancoord: 152..191
e-value: 1.9E-7
score: 31.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 117..187

Blast
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BLAST of TCONS_00011396-protein vs. Swiss-Prot (Human)
Match: ABCF1 (ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.086e-49
Identity = 93/150 (62.00%), Postives = 114/150 (76.00%), Query Frame = 0 
Query:   79 AETEDTGVKMSRKEKKKAAKQAKY----AAEQAAMENESQFSVSQQEQTSKAAAIENATDIKVEKFSIAARGKDLFVNADLTIAQGRRYGLVGPNGMGKTTLLVHIARRLIKIPPNIDVLLCEQDIQVDETPAVDMVLKADKKRLELLAE 224
            ++ +D    +S+KEKKK  KQ +Y    A+ +AA   E+ FSVSQ E +S+ A +ENA+DIK+EKFSI+A GK+LFVNADL I  GRRYGLVGPNG GKTTLL HIA R + IPPNIDVLLCEQ++  DETPAV  VL+AD KRL+LL E
Sbjct:  244 SKADDPYAHLSKKEKKKLKKQMEYERQVASLKAANAAENDFSVSQAEMSSRQAMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEE 393
The following BLAST results are available for this feature:
BLAST of TCONS_00011396-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCF12.086e-4962.00ATP-binding cassette sub-family F member 1 OS=Homo... [more]
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