TCONS_00011232-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011232-protein
Unique NameTCONS_00011232-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011232-protein ID=TCONS_00011232-protein|Name=TCONS_00011232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MKCKGELKEFKIIGRRVPTAKVPKPPLFRMRIFAPDVVAAKSRFWYFMAL
HKKLKKTVGEIVACSQISEKNPSSVKNFGIWLRYNSRSGTHNMYREYRDI
TVCGAVTQCYRDMAARHRARASSIQILKIETVESSKVRRPQVKQMINSKL
RFPLPHRVMRSQFRSTFQAHRPHTHFYHP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006286XLOC_006286Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011232TCONS_00011232Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023573Ribosomal_L18a//L18Ae/LX
IPR021138Ribosomal_L18a/L20_eukaryotes
IPR02887750S_L18Ae/Ribosomal_L18a/L20
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.10coord: 8..74
e-value: 1.2E-18
score: 66.7
NoneNo IPR availableGENE3D3.10.20.10coord: 75..148
e-value: 3.3E-40
score: 135.9
NoneNo IPR availableSUPERFAMILY160374RplX-likecoord: 72..147
IPR023573Ribosomal protein 50S-L18Ae/60S-L20/60S-L18APFAMPF01775Ribosomal_L18Acoord: 7..130
e-value: 4.6E-53
score: 178.3
IPR02113860S ribosomal protein L18a/ L20, eukaryotesPIRSFPIRSF002190Ribosomal_L18acoord: 2..176
e-value: 7.1E-76
score: 251.5
IPR02887750S ribosomal protein L18Ae/60S ribosomal protein L20 and L18aHAMAPMF_00273Ribosomal_L18Aecoord: 30..130
score: 36.122

Blast
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BLAST of TCONS_00011232-protein vs. Swiss-Prot (Human)
Match: RL18A (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.347e-84
Identity = 115/176 (65.34%), Postives = 140/176 (79.55%), Query Frame = 0 
Query:    1 MKCKGELKEFKIIGRRVPTAKVPKPPLFRMRIFAPDVVAAKSRFWYFMALHKKLKKTVGEIVACSQISEKNPSSVKNFGIWLRYNSRSGTHNMYREYRDITVCGAVTQCYRDMAARHRARASSIQILKIETVESSKVRRPQVKQMINSKLRFPLPHRVMRSQFRSTFQAHRPHTHF 176
            MK  G L+E+K++GR +PT K   PPL+RMRIFAP+ V AKSRFWYF++  KK+KK+ GEIV C Q+ EK+P  VKNFGIWLRY+SRSGTHNMYREYRD+T  GAVTQCYRDM ARHRARA SIQI+K+E + +SK RRP VKQ  +SK++FPLPHRV+R Q +  F   RP+T F
Sbjct:    1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
The following BLAST results are available for this feature:
BLAST of TCONS_00011232-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL18A1.347e-8465.3460S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
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