TCONS_00011185-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011185-protein
Unique NameTCONS_00011185-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011185-protein ID=TCONS_00011185-protein|Name=TCONS_00011185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp
SKESTIKTQNSYHNVNMKDIFQKVSPATGKPSTDMTNIHKEITIDNRIFL
KGLRLDTKEEDLENIFKTYGAIVETKIIRDNFDGRSKGFGFITFDSQQVA
QDILRDVQSIQTDDMEITIAPAKMKRLPPQGKSFRNRHVPFSHQPMHPQQ
NFIPVNTPMAPQYYSMPCVVSPDGLFTWYPNIPTYQQKTYPEIIYPDANM
DPNLVPMLSPPDSPNSSNISNENKTNNSVESNSNNIYSPTSKYDSNNFQP
LQPLPQTPNTNQQLTELTPTIINNQNMVDNQQNEFNKSNTGLPPTTNAGN
GVFQNLLPSSTEIVHLNNGYLYPQNAFLPQNTNFVNAYPHPQPLAPLNST
NNKLKPSPIFFNGVPLYDNAPTPPSTPTTPNPPMEINVITSDMKNLVVQP
SFQRIHFMITPQLHLQRPPPLIPQWKSTSLLQT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006266XLOC_006266Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011185TCONS_00011185Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 47..120
e-value: 6.3E-16
score: 68.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 48..117
e-value: 9.1E-16
score: 57.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 46..124
score: 16.637
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 24..135
NoneNo IPR availableGENE3D3.30.70.330coord: 34..132
e-value: 3.0E-19
score: 68.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..262

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011185-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top