TCONS_00010996-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010996-protein
Unique NameTCONS_00010996-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1393

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010996-protein ID=TCONS_00010996-protein|Name=TCONS_00010996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1393bp
MMNGEDKDEFRSKFDEFVKSSSRSDKSKALPDDQYDDIVKVLKDGHGDKI
LKKKIRRNGYKLMNYPKIGLKDALFIPLKEGKSNERKKIKKKDVVDGNEL
DAKEMKGARNEVTEERAETIKLTDNSLFSNHRKVFRINEMFDLVKECHSS
ESVHAGEKKTYQNVCQFACNVSMAIVKFFIENCVPCSSKKPQLSVAKLTP
IVSRFFMDRMQIDLIDMTHDPDEKFRYIGHIVDHFSKYRVIFALKSKQPA
EVGLHVKARYLAYFGLPKIVQSDNGAEFVDLIIRAIIVLWPGNARIINGS
PRHSQSQGLVEQGNCDIEKKISALRAERKCKSWVKLLPEIQYAMNTTVVS
STKKTPYSIVFGQHPNRLAAFGVKFDEPVINEEELRDIIVPVAQDTLAEA
EAKAEPETVQENDAASSFEPTCSKRKAIRDEVNSNLELSRNKMQEKYQRK
KGKRVASFSVGEHVGLLIPEKIRKKADIKRLPCIVLQKSNNRHCESFSLM
SEYGILNGKFTASELEKYPGQVNGLDDVKLSLNAASLKLLGKEAISCKCS
TFCSNNLCVCFKNSVPCSSKCHKGMNQNCRNKELNFRFEEVVLPRYGGLY
GSNNTIYTFTNTCPLDTWFAIFQFVEPRISSQVKSKRFQSLLELLSRNDF
VGGRMLVANAKGIQPKKQIIDFFGSEHELIIDLFLDENFKSVVESQCDSK
ECTNSHALRSLSQCPSKLEGQTIEHSLKEWFFEESYTVCGEPVVDENITN
KYECNNTETGEVTYHCSGYRRTNQRVVLEQPILLPLILCETETLSTSDFP
TYLTVDENIKFRLQALTLNKKSHYSAIINTKQGWIYYDGKEIPCVKKMPR
FEVPKGFIPSYCLYVVDQNDYNENKDVGLEIKVPLDTLDFVFNQGEDILV
NQSLQSVLSDSMSPVQQSEDFKDLVNGELLPVTEDEINSHVLYDERKSND
EQQTRQNLGCNNEDPMCIDDEEDEQSNRNDDVTFQRCSGSEGGSCFIDNT
PTEALQKIINRSQTAINILISKPFGQALFSNDLRSVIFHWLNDTVMDSYL
KHLFKENNTKGTGYIETATMRQLMDQSVDYLMPPQVKRFFSTKKRLIGTY
SIGSHWRLLIVYPKDQSIWLVDPLGETVDIMNQTKQAWQSCMKVNFPNKT
NVWKTKQVNHAKQLDAISCGVFCLKFAECILNGRELCSTFSEDDVNAFRR
TIAIKLIELGGNGKWCKEYCRICDRKSPPPLTLPTGKNDQWVVCDQCSPE
MWYHAGCLGIKETSQLKDVSYVCNKPIVKDEKLSLAMDETLIRKRANKQI
RKCGGCSVPISEASLDPPHDMVLLKKMLRPKRNCSWQSKKEDDFVVASVH
YHVQPGCIKDIDLGKVILSRDMHLLASHRERLSDIGVNVDSLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006165XLOC_006165Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010996TCONS_00010996Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR003653Peptidase_C48_C
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 433..453
NoneNo IPR availableGENE3D3.40.395.10coord: 1092..1215
e-value: 4.0E-14
score: 52.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 942..979
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..421
NoneNo IPR availableSUPERFAMILY54001Cysteine proteinasescoord: 1039..1210
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 1219..1277
e-value: 4.7E-5
score: 32.8
IPR003653Ulp1 protease family, C-terminal catalytic domainPFAMPF02902Peptidase_C48coord: 1040..1206
e-value: 9.7E-9
score: 35.3
IPR003653Ulp1 protease family, C-terminal catalytic domainPROSITEPS50600ULP_PROTEASEcoord: 1018..1180
score: 10.785
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 200..453
e-value: 1.1E-24
score: 86.7
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 214..366
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 210..318
e-value: 1.2E-9
score: 38.3
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 196..364
score: 18.887
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1216..1289
e-value: 5.3E-8
score: 31.9
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 1219..1274

Blast
[Close]
BLAST of TCONS_00010996-protein vs. Swiss-Prot (Human)
Match: SCND3 (SCAN domain-containing protein 3 OS=Homo sapiens GN=ZBED9 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.155e-22
Identity = 68/231 (29.44%), Postives = 108/231 (46.75%), Query Frame = 0 
Query:  132 RKVFRINEMFDLVKECHSSESVHAGEKKTYQNVCQFACNVSMAIVKFFIENCVPCSSKKPQLSVAKLTPIVSRFFMDRMQIDLIDMTHDPDEKFRYIGHIVDHFSKYRVIFALKSKQPAEVGLHVKARYLAYFGLPKIVQSDNGAEFVDLIIRAIIVLWPGNARIINGSPRHSQSQGLVEQGNCDIEKKISALRAERKCKSWVKLLPEIQYAMNTTVVSSTKKTPYSIVFG 362
            R      ++FD++   H S   H G  +  + +     N++  ++  ++  C PC  K  +L    LT    +    R Q+DLIDM  +PD ++R+I H  D  +K   + +LKSK+P EV  H         G P ++QSDNG EF   ++  +  +WP   +I++G  +  QSQ   EQ   DI K+I +         W + L  IQ + N     S ++TP    F 
Sbjct:  299 RYYLHSEDLFDILHNTHLSIG-HGGRTRMEKELQAKYKNITKEVIMLYLTLCKPCQQKNSKLKKV-LTSKSIKEVSSRCQVDLIDMQLNPDGEYRFILHYQDLCTKLTFLRSLKSKRPTEVA-HALLDIFTIIGAPSVLQSDNGREFSSQVVSELSNIWP-ELKIVHGKSQTCQSQSSAEQTE-DIRKRIFSWMQTNNSSHWTEFLWFIQMSQNQPYHRSMQQTPCESAFS 524
The following BLAST results are available for this feature:
BLAST of TCONS_00010996-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCND31.155e-2229.44SCAN domain-containing protein 3 OS=Homo sapiens G... [more]
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