TCONS_00010931-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010931-protein
Unique Name	TCONS_00010931-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	468

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010931-protein ID=TCONS_00010931-protein|Name=TCONS_00010931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
QNVGAASSPRVPPERSPPQEAALNTGPTFPKLPNFTLTKEELGLTHIGDL
SEPDMSITRRLALIELTALFDQSGVPIKTRRKPNVKLKLKDNGTFGVPLI
TLCSREESKHNPNVKVPKILLQLIGYLERHGLHEEGLLRVPGSAHRVKLI
REEADKNPDLSTLEWEGRKMTDIATCFKQFLRDLPEPLLTYEYQNTFTSV
AEIPDRKVQLQALNLLVVLLPPVHQECLKKLLVFLNKVIANESSNKMGLN
NVAMIMAPNLFFQNNAKINKNEAKKAAGMTDVLRMLIKYQLIVWTIPSFM
VSQIRFLNEAGAKTKDPKALSKIIKRRRLDSPSHLLNPAIKMTRPGGGGG
SSGDELEDFDESLIIRVRAPTLNKQSMAIQLSTQTTVAEVVSKFQWQRQK
SNKEKDEIDTSRLRIKPRQDNELALVDLYLYEVGGNIGERRLDSSACISA
ILRENPNAEWVLKSEIRR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006137	XLOC_006137	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010931	TCONS_00010931	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000198	RhoGAP_dom
IPR008936	Rho_GTPase_activation_prot

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000198	Rho GTPase-activating protein domain	SMART	SM00324	RhoGAP_3	coord: 114..291 e-value: 1.3E-48 score: 177.5
IPR000198	Rho GTPase-activating protein domain	PFAM	PF00620	RhoGAP	coord: 117..265 e-value: 3.9E-40 score: 137.0
IPR000198	Rho GTPase-activating protein domain	PROSITE	PS50238	RHOGAP	coord: 97..294 score: 38.484
None	No IPR available	GENE3D	1.10.555.10		coord: 53..308 e-value: 6.6E-55 score: 185.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
IPR008936	Rho GTPase activation protein	SUPERFAMILY	48350	GTPase activation domain, GAP	coord: 91..291

Blast

[Close]

BLAST of TCONS_00010931-protein vs. Swiss-Prot (Human)
Match: RHG18 (Rho GTPase-activating protein 18 OS=Homo sapiens GN=ARHGAP18 PE=1 SV=3)

HSP 1 Score: 300.827 bits (769), Expect = 3.666e-95
Identity = 183/480 (38.12%), Postives = 270/480 (56.25%), Query Frame = 0

Query:   11 VPPERSPPQEAALNTGPTFPK----------------------LPNFTLTKEELGLTHIGDLSEPDMSITRRLALIELTALFDQSGVPIKTRRKPNVKLKLKDNGTFGVPLITLCSREESKHNPNVKVPKILLQLIGYLERHGLHEEGLLRVPGSAHRVKLIREEADKNPDLSTLEWEGRKMTDIATCFKQFLRDLPEPLLTYEYQNTFTSVAEIPDRKVQLQALNLLVVLLPPVHQECLKKLLVFLNKVIANESSNKMGLNNVAMIMAPNLFFQNNAKINKNEAKK---AAGMTDVLRMLIKYQLIVWTIPSFMVSQIRFLNEAGAKTKDPKALSKIIKRRRLDSPSHLLNPAIKMTRPGGGGGSSGDELEDFDESLIIRVRAPTLNKQSMAIQLSTQTTVAEVVSKFQWQRQKSNKEKDEIDTSRLRIKPRQDNELALVDLYLYEVGGNIGERRLDSSACISAILRENPNAEWVLKSE 465
            +PPE +P  E  +N   +F +                      LP+F L K++ G T IGDL+  DM     LALIELTAL+D  G+ +K ++   VK+K KD+G F VPL  L  +++ K  P +++P I  +LI  +E  GL  EGLLR+PG+A R+K + +E +      T  WE  K  D A+  K F+R+LP+PLL+ EY   F +V  +P +K QLQALNLLV+LLP  +++ LK LL FL +VI N+  NKM + NVAM+MAPNLF  +   +  +E ++   AAG  + + +LIKYQ ++WTIP F+V+Q+R  N    K KD +A+ K++K+   D   +                S+ D   D  +  +IRV+AP L+K SMAIQL+ +   ++V+++F  Q     +                   L   +++LYE+GGNIGER LD    +  + + NPNAEWV+KS+
Sbjct:  218 IPPEETPAPETDINLEVSFAEQALNQKESSKEKIQKSKGDDATLPSFRLPKDKTGTTRIGDLAPQDMKKVCHLALIELTALYDVLGIELKQQKA--VKIKTKDSGLFCVPLTALLEQDQRKV-PGMRIPLIFQKLISRIEERGLETEGLLRIPGAAIRIKNLCQELEAKFYEGTFNWESVKQHDAASLLKLFIRELPQPLLSVEYLKAFQAVQNLPTKKQQLQALNLLVILLPDANRDTLKALLEFLQRVIDNKEKNKMTVMNVAMVMAPNLFMCHALGLKSSEQREFVMAAGTANTMHLLIKYQKLLWTIPKFIVNQVRKQNTENHK-KDKRAMKKLLKKMAYDREKY-----------EKQDKSTND--ADVPQG-VIRVQAPHLSKVSMAIQLTEELKASDVLARFLSQESGVAQ------------------TLKKGEVFLYEIGGNIGERCLDDDTYMKDLYQLNPNAEWVIKSK 661

The following BLAST results are available for this feature:

BLAST of TCONS_00010931-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010931-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RHG18	3.666e-95	38.13	Rho GTPase-activating protein 18 OS=Homo sapiens G...	[more]

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TCONS_00010931-protein (polypeptide) - C. hemisphaerica