opsin 4 (polypeptide) - C. hemisphaerica

Overview
Nameopsin 4
Unique NameTCONS_00010847-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010847-protein ID=TCONS_00010847-protein|Name=opsin 4|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MEEANLLVLVFLALIFFISIITNLLLLIFTIKIYKRELASNFYISGICLA
DMLSATFGIIPEFIVNYRPDFIDDSNLLCISAGLITLAFCIVTINLFGIL
AFVQALAIIKPFVYRRYFTQALNNILIVLAVIIYGLFWAVLPYSMNSKYV
PDLDGRRCSLDWKDKDMKYYIIACTVIGLFVPVGTQIISLFKSRRQLMKR
KNEAHAKRILGYEKFYIKISTIIVTVFLMVWTPYTVVGFMIVFGYYPSKI
AFTVCAMSAKLATLCNPVVYYCYSQRFKRFVRQILTLKWCDPDDDLQLKR
TSVERQTSITSTMCAVIANAGVYLPTIPESQGDSPQIVKNTNFKENGNGL
VED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006088XLOC_006088Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010847TCONS_00010847Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 216..240
score: 24.71
coord: 252..278
score: 23.46
coord: 7..31
score: 19.94
coord: 40..61
score: 19.97
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 23..270
e-value: 2.0E-11
score: 43.6
NoneNo IPR availableGENE3D1.20.1070.10coord: 1..300
e-value: 1.5E-37
score: 128.6
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 3..302
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 22..270
score: 22.839

Blast
[Close]
BLAST of opsin 4 vs. Swiss-Prot (Human)
Match: OPN3 (Opsin-3 OS=Homo sapiens GN=OPN3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.629e-17
Identity = 70/265 (26.42%), Postives = 125/265 (47.17%), Query Frame = 0 
Query:   22 TNLLLLIFTIKIYKRELASNFYISGICLADMLSATFGIIPEFIVNYRPDFIDDSNLLCISAGLITLAFCIVTINLFGILAFVQALAIIKPFVYRRYFTQALNNILIVLAVIIYGLFWAVLPYSMNSKYVPDLDGRRCSLDWKDKDMK------YYIIACTVIGLFVPVGTQIISLFKSRR-QLMKRKNEAHAKRILGYEKFYIKISTIIVTVFLMVWTPYTVVGFMIV--FGYYPSKIAFTVCAMSAKLATLCNPVVYYCYSQRF 277
             NLL+L+   K  +    ++  +  I L+D+L + FG+   F+   R  ++ D+ + C+  G     F IV+I    +LA+ + + ++   V    F+ A   I  +    +Y L WA  P    ++Y+ D+ G  C++DWK KD        +  + C V+ L V        L+  R  + ++        +IL YEK   K+  +++  FL+ W PY V+ F++V   G+  +     V  + AK  T+ NPV+Y    ++F
Sbjct:   58 NNLLVLVLYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSCLRNGWVWDT-VGCVWDGFSGSLFGIVSIATLTVLAYERYIRVVHARVIN--FSWAWRAITYIW---LYSLAWAGAPLLGWNRYILDVHGLGCTVDWKSKDANDSSFVLFLFLGCLVVPLGVIAHCYGHILYSIRMLRCVEDLQTIQVIKILKYEKKLAKMCFLMIFTFLVCWMPYIVICFLVVNGHGHLVTPTISIVSYLFAKSNTVYNPVIYVFMIRKF 316
The following BLAST results are available for this feature:
BLAST of opsin 4 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OPN31.629e-1726.42Opsin-3 OS=Homo sapiens GN=OPN3 PE=1 SV=1[more]
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