TCONS_00010811-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010811-protein
Unique Name	TCONS_00010811-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	685

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010811-protein ID=TCONS_00010811-protein|Name=TCONS_00010811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp
MENYSANPDLMRYLQGEISFDTWLEQQGNEDEAENHHVQQRVGTTPSGRP
QAMSQGVSEESASVFSSWVDAFTSGAASGGDGGGGDEQVTLPGTSKQFFN
NTSGGVVEEDSDYEEDDGTETEEEVLQIGKANKSEKAKRQLITFDLQMPS
FEDLPTPLESELPSTVTLTITWQELRPIIKELAVIIPTSTINKRRSKMRH
RRLTEDSTGDNVPDIMKDFQDFQLRKRDSKRTPANHHKLPELLRLQMGQA
NLLVAKQDFKQAADICMEIVREAPYSGLPFKTLAFIYDEQGDKEMALQYS
LIYAYLDCRDSHEWIEMGRRCREADNVKQEMACYDKACKYKPWDIELQWE
RSLKYFAYGDYRKCLDIYFQIHKRVTPVDKITYMSCGKRIAKLYHKLGLK
DKVQYSLQLAFDACDTVEDFEAVNILCEIYIENKEFINAIELIIQQCGVK
IPSFVYERIKALTRGDSKRLDEFLSQSVEMTKEKFEERTNELASNVADTL
KEGQETLNIMENFNTASPEKTYATLEPANENATVETSEYYCPSNLPLDLR
VKLAQCLIYSNQLDFVDDIVYPLFSESIDDVGDLVLDLGEAYYDIGNYRE
ALKYIVEVIASEKYNQAAVWLKLAEVYEHLDEMNQCIDAYYQVLHLAPLQ
VSIRLALASALKIVGRDEEALTVLSEYDGTRLDED

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006066	XLOC_006066	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010811	TCONS_00010811	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom
IPR013026	TPR-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 482..502
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..121
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 582..615 e-value: 9.5 score: 15.2 coord: 617..650 e-value: 0.038 score: 23.1 coord: 243..276 e-value: 270.0 score: 2.3
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 617..650 score: 8.998
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 582..615 score: 8.585
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 311..344 score: 5.782
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 245..679 e-value: 1.4E-39 score: 135.6
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 583..672
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 243..425
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 243..344 score: 6.7
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 582..684 score: 15.021

Blast

[Close]

BLAST of TCONS_00010811-protein vs. Swiss-Prot (Human)
Match: TF3C3 (General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.727e-60
Identity = 140/449 (31.18%), Postives = 226/449 (50.33%), Query Frame = 0

Query:  238 KLPELLRLQMGQANLLVAKQDFKQAADICMEIVREAPYSGLPFKTLAFIYDEQGDKEMALQYSLIYAYLDCRDSHEWIEMGRRCREADNVKQEMACYDKACKYKPWDIELQWERSLKYFAYGDYRKCLDIYFQIHKRVTPVDKITYMSCGKRIAKLYHKLGLKDKVQYSLQLAFDACDTVEDFEAVNILCEIYIENKEFINAIELIIQQCGVKIPSFVYERIKALTRGDSKRLDEFLSQSVEMTKEKFEERTNELASNVADTLKEGQETLNIMENFNTASPEKTYATLEPANENATVETSEYYCPSNLPLDLRVKLAQCLIYSNQLDFVDDIVYPLFSESIDDVGDLVLDLGEAYYDIGNYREALKYIVEVIASEKYNQAAVWLKLAEVYEHLDEMNQCIDAYYQVLHLAPLQVSIRLALASALKIVGRDEEALTVLSE-YDGTRLDED 685
            KLP  LR  MG+AN+  A+ + ++A  +CMEI+R+AP +  PF TLA IY++QGD E +LQ+ LI A+L+  D+ EW+ +     E DN+KQ + CY KA KY+P ++   WERS  Y   GD++  +D Y +I   ++P D   +M   + +AK Y++          +  AF     +   E VNI  E+YI NK++  A+E+I    G+     V E+                      T E+     N+   NV  T+ +G                                      P ++ + L V    CL++ N L+ ++ ++  L  ++ +D+GDL LD+ EA+ D+G Y  AL  +  ++ SE+YN A VWL+ AE  + L  M +  ++Y +V+ LAPL +  R++L++  + +G+ E+AL  L   YD   L +D
Sbjct:  144 KLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSYYEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGI-----VLEK---------------------KTSEEGTSEENKAPENVTCTIPDG-------------------------------------VPIDITVKLMV----CLVHLNILEPLNPLLTTLVEQNPEDMGDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQD 525

The following BLAST results are available for this feature:

BLAST of TCONS_00010811-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010811-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TF3C3	1.727e-60	31.18	General transcription factor 3C polypeptide 3 OS=H...	[more]

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TCONS_00010811-protein (polypeptide) - C. hemisphaerica