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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00010186-protein ID=TCONS_00010186-protein|Name=TCONS_00010186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=3692bp
VIVLKKAKEILLKEKKSSEDLALQASRLSLKVIENLVKLDLLHGTPKDVC
CPNKQPIEKAIPIIENNCYEPKNISIVLSQICWKCRRLDVDILSSLFKAK
NELREKNWRKFKSYKDKAVTKQTIASKSKPSQIIRSLSKDTAPKEVWEYN
TYGEPIKKKRNSGSTISSERNICWYEQPKDVVIFNPNDVIKSTEGTPESI
PHNEEEEGIKKRQDEKSTGTTVDKLPISNTRPVQLNQPIPVSAASQLFQL
HKSPMEGVFKTIAKFKRPNGETQIIVNAKNTSAQRQANNIVWFTPTTKES
HVVSKPPEKTEACASPSTQDSFTSTAINEAHDSVCHLKIENVKSIALETS
SKNPPSSEMNSSMSLEPLSRNPPSSENISSMALETSSKSHLTSEMKISND
RTPSPDIVETSVKSLISGRPDLTNGPSVIVATKDKTTVNTELLPLVTSDR
INIGSKSQAVTTTCIHGNVTSAHVTSSLVTSTHVTSTFNSIGTSDNDHSS
IPNLLAFVTKNSIPLHPLNATKLHGEQLGIQNEAITKHSLPETPETSYQA
PDCESTRVPPDQDIKISFPETTLTDQDTLCDLRIEKVESVAKFPHSTLSD
QDEVNFTIKDVKSITNLSHRTSSPLNDSRGKDVDSSTTKRLDSSRDVKII
QVIDAMKQLSGSTRQADQYLNNSTLAGKTHPGNPVSSPSSNSAQYNAYTE
SFLATKDAFTSNKSSHGSLFKAIEHHSADSDSDDLLVIDDLLDEEAQTST
MQPLSSTNPDCTTQKKQGHTHKDSLNCKEQQSNVKYTNRTTQEKQGHLTH
KDSLSCKDQHPPQQSAPSPSTPIHEDKERSRDEVRHQYRSATIQGVETFL
QTFQKKQSQSIQQHSATNIPQTHSTEDAKTTTSDIKLTNHPTSSANALEI
REAPTNQTTTTLRDSSTITINSRPVSIHGQHSRQPNSSKTLSTLSDPLTA
LEPNNPATMRKTHSTIDGNRSNSPELKKRKLTNKDVQYVQKEDVKSWIVT
SQPKKHQITNPENTIQHLQTGRAEANHANVSELNTTQAANTDQVANTNAN
NVGSVQYLQKEDVMKWISPPQQEYLQKVDPEVFSLRHVSSQPQNKSPQIQ
PSDDNLNGRSQINHLDDTSPIMSFEANEDCNRHTLSPTLQTVQQSESQSI
HCRPRSAPPVPVYKKADRLFTPISKGRHKPYHQPTNNKHTFACNICGKLC
FGFRNLQQHKQKSHNFVKCELCYECFPNLKELKTHTNNHFGKLPPNGGKL
PPNGEKLPPNGGKLPPNGEKLPPNDGKLIASGRLTNMKERSIKSTDIQSG
ETRVTKDHTQTSPDRYGDAFEAGENQPTKIQESTENADPTQRNTARNSTK
QEENHAQKIEVLPNENKVAQSNQSTDPTKNITLEGERSHGGGKLRPQSQG
EGELHPEGQGDLFACNKCGKIYRDLGVLKNHERTHRKKSFKHSHKLFTKH
TESTPKESVIHPGHSSTVLPTNQEPAPKPQTLQAADHHEIFSAKDVPLKN
SNPNQSVDNTHKRTKSNKEVSTNEKKRILVSSPPTTTPPMTIHQQQEDNS
NDNKNISTATSTCPHKDAVEIQKLLNEGPSKGTLATVNDRHKSMERNDGD
QITLFKQQLQHISEVAQLQQTLAFNMAKTSNSRDISIARGFQESALDQSC
RVKKLLLSSTKLEESFRKLDEKLRKLSKKPRKLSKKTRKLNKEYQALKDD
FEAKLDSCRKEIEVLQNRSSLLQRQILVQHKRLHSSSFVPTSRNLEPKED
LIEVYFDHRNVQKLEILQKQLSIDLDASIILQKTFKNMITQPLGYRTPRK
DIQSLHNEARENEQQIRQLQPTANKLKSTLKGIQRYTQQGDVDNTQLTLV
RKDYIKQFISFHKQADETQQRTKYLQRKVLLLHRERNRQQEFLRKCSTLA
KESGAKVSRIPIAPNKQIAPLQKCTTVDGESTLKVSQNLVALNEQNPPSI
PALLHKHQTASNSNAQTDVSVTEDNTSTKESDSSSHQTLAAYNILLNLSC
CVNAIPTSFDTSNATASPMVLSSAHNTPMTSSTSTTVSLAVCSTAMASST
SVCSTAMASSTSVCSTAMVSSTSLRSTAMVSSNSQPITSSFSIKSESEGK
LTCPPDNVKRSPPMLSDQVNSSTSVATTTTANLSQQLTSTPNNQQPYTLS
SDPPLDATTPPISMTLVTRPVTSLPVSKTLTTSQSQTASSFAPTTPLVLT
AEQLNMLTTKVTTNSTIFAPTTHAHTAPVYFKTTCPTALVTYTQPLFLSA
KQIRVVPPVTINNTIFPTLIHTQATPPTTTQPLSLTADQLKMISTVIASS
TPKNIATSNTTTIEAQSQPLHLTAKPAKLVSIATTISTTHTISSTMKTTP
IDVSNPSPTLIDNKTTITTSSKSSPQKDSTSLRKRDIILKFLSEREKLQS
TRGSTQESPASEEIVNSQDVSAEIATSTAIAIQQPSSIVYSSSMEVNVES
KDTGLRIKESIATKQPGNLPVTVQIESNNLPTPVQIESNKLQTADTKLPD
NLPIPAQIEFNNLPKTDIKIPDSAETSNPSELNIAPTFSEESQKDFSIIQ
INQRSDVMDKSEDELFSTQDTGVPENPSLPNEFDETRSVNSDKRRMEEQR
ILNRLNELMDTFPTFADSVAGSSSPISDHNGMEESDSRTGSSSSMSDNEL
YDFATGPARDCFSTLEKDTVQTAEDLNSTGSSRPTTVVAKAIPSTTVKDA
DKNVSVIGEEVSVLDENLSVIGEEVSVLDEDISVLDENVSVLDENVLVHN
ENVSVLGEEVSVLDENVSVLDENVLVLDENLSVLDENLSVLDEKDSVLED
NVSALNEYVSVLDEEVSKITSTMSNQQSIEEEKIGEVETLRGDKLVSETS
LDTSVCEQELSDEVSSDQNLSNGMVHGEEMTILSGLSSNQKISASMAPYE
EITHLGEEASNQKLFTSTEPHEELNISVDEDSDIDEDEPFDFDFQCDTNS
QKVNPVLSLIQRLQAQVTPQPSAPNLPNTKVESGVKTPVNVTTSLRENQS
PQVTSSEEKQEISQLLSQLVHDVELLVSMQDLADQTERIYQLNKADSRNK
QTSVLQDHESEKNTSSKILRTFSSEEIKTTKTNGNTTVQVHNIRDFSQGL
GIQEVVDPAEYADESFNSDSEDMISYHDVLDIASAINNQTSSNAMHHGKI
DYNARLKALEHDDEDYADDEDSDDEVVIIVDREAPGKMATTKLSEVSSVA
GIQKSDQLTKPTVESINVERQASKKTVAIKQNAATSVTGIQKSENSTTIE
TTSLKSERKTPGKTMDKPGKIITTTTKQSEGIPTPEATNVVMSSKIDRKT
PEIIVKKKNDVYPTAETESSDHVENTMGEISKDGENLAFVKRETQQTTDG
NVVSLPSKELESEADEKKLREDLVNKRLNISANDEDLVVESRQERKVESH
HVAVAVGNELLSLVNQSGVGHSDSWNGKSLEELMFDEEDVGTSTVESSGN
RELATFGNVKNQICGGSSKMKDCMSTETIDRLKKKEERSLCSSEELIEFR
PDHVPPTVTKESPEAFLADQPPILIDCSPIKRQPTISLLSDDAENNNLPD
NVKLVEEPPPMLLREVPPMLTKQTEVIALNHEACFVPEEPHSLLREVPPE
LPKVSKKEISTANILSASACLNPPVLLREVPPEIDAISSSKAVQPSIAEQ
PPSVIGESLDFVESLPASVINQFSKWKKTDQAHSLSLVTHRI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1691..1725 |
| None | No IPR available | COILS | Coil | Coil | coord: 1659..1679 |
| None | No IPR available | GENE3D | 1.20.120.330 | | coord: 2687..2844
e-value: 1.6E-4
score: 20.8 |
| None | No IPR available | GENE3D | 2.40.155.10 | | coord: 1122..1399
e-value: 5.7E-7
score: 29.3 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 1412..1435
e-value: 9.3E-5
score: 22.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2619..2650 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2562..2595 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1087..1116 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 857..982 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 747..835 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1957..1984 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3248..3270 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 673..692 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1492..1552 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2347..2381 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 299..320 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 348..406 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2079..2160 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 542..563 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 192..230 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 617..640 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1237..1408 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3043..3062 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2521..2542 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1434..1479 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 1413..1435
e-value: 0.014
score: 24.6
coord: 1217..1239
e-value: 1.6
score: 17.7
coord: 1191..1214
e-value: 0.15
score: 21.2 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 1193..1214 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 1219..1239 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 1415..1435 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 1413..1440
score: 11.011 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 1217..1244
score: 9.951 |
Blast
The following BLAST results are available for this feature:
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