TCONS_00010183-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010183-protein
Unique NameTCONS_00010183-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010183-protein ID=TCONS_00010183-protein|Name=TCONS_00010183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MPIMYEKVIPKIEPLELGGNMTSFHGHPGNAQMMTAHHGTPMHILPSHQM
IGLHSHHHQNMSPGPQMNGMQHHDENSPISMTTVQTASPVTTNQSESDKK
ARDHVKRPMNAFMVWSREKRKKMSQINPRMHNSEISKILGAEWKRMTEQE
KGPYIEEAKRLQTQHSIEYPNYKYKPRRRKPKAMMKKDKMGYPYDANGVP
AGMKFPYPYANIATFPQDAMYTPIYQMPGAPAGYAMYAAPAPTAVSTADQ
SRQSMVSPSGQARHSPPTSTPDFYTSMAIQPSSTVRSSSADLMMSVTSQN
DRYTSINTTQGNVQYTSTPPLHIPTAAEPATGSPAYTPMYGGQRHL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005714XLOC_005714Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010183TCONS_00010183Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 104..174
e-value: 2.2E-25
score: 100.3
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 98..193
e-value: 7.5E-28
score: 96.4
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 105..173
e-value: 1.8E-23
score: 82.7
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 105..173
score: 22.004
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 90..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..273
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 104..175
e-value: 4.44483E-34
score: 120.481

Blast
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BLAST of TCONS_00010183-protein vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.527e-39
Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = 0 
Query:  100 KARDHVKRPMNAFMVWSREKRKKMSQINPRMHNSEISKILGAEWKRMTEQEKGPYIEEAKRLQTQHSIEYPNYKYKPRRRKPKAMMKKDKMGY---------PYDANGVPAG 202
            K  DH+KRPMNAFMVWSR +R+KM+Q NP+MHNSEISK LGAEWK ++E EK PYI+EAKRL+ QH  E+P+YKY+P RRKPK ++KKD+  +         P  A G+P G
Sbjct:    3 KPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRP-RRKPKNLLKKDRYVFPLPYLGDTDPLKAAGLPVG 113
The following BLAST results are available for this feature:
BLAST of TCONS_00010183-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX141.527e-3959.82Transcription factor SOX-14 OS=Homo sapiens GN=SOX... [more]
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