TCONS_00010125-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010125-protein
Unique NameTCONS_00010125-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010125-protein ID=TCONS_00010125-protein|Name=TCONS_00010125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MLLTKVVKMHRRDATRKSSNWAVSVMNFLQGKKEVKIRQIGDPVLRELAK
PVEQAAFVTPEFKYIVDELVSMMRKSNGAGICAPQIGISLQIIAFEVTGH
DIKLAMDKYGSKGISKMQMTLCPLTVLVNPKMKILDSRTTILRESCLSIE
NYSALVPRHQEIKVEGLNPDGQHIDLHASGWTARIIQHEMDHLQGNLYVD
TMTYKSLRNEKWQTYKT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005679XLOC_005679Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010125TCONS_00010125Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023635Peptide_deformylase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023635Peptide deformylasePRINTSPR01576PDEFORMYLASEcoord: 144..155
score: 39.51
coord: 67..96
score: 31.6
coord: 156..174
score: 31.58
coord: 175..204
score: 45.31
IPR023635Peptide deformylaseGENE3D3.90.45.10coord: 17..217
e-value: 7.1E-52
score: 174.6
IPR023635Peptide deformylasePFAMPF01327Pep_deformylasecoord: 36..204
e-value: 1.4E-42
score: 144.9
IPR023635Peptide deformylasePIRSFPIRSF004749Pep_defcoord: 3..217
e-value: 2.2E-51
score: 172.2
IPR023635Peptide deformylaseHAMAPMF_00163Pep_deformylasecoord: 33..210
score: 23.708
IPR023635Peptide deformylaseCDDcd00487Pep_deformylasecoord: 37..198
e-value: 9.00475E-55
score: 172.671
IPR023635Peptide deformylaseSUPERFAMILY56420Peptide deformylasecoord: 34..212

Blast
[Close]
BLAST of TCONS_00010125-protein vs. Swiss-Prot (Human)
Match: DEFM (Peptide deformylase, mitochondrial OS=Homo sapiens GN=PDF PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.851e-47
Identity = 72/174 (41.38%), Postives = 105/174 (60.34%), Query Frame = 0 
Query:   39 QIGDPVLRELAKPVEQAAFVTPEFKYIVDELVSMMRKSNGAGICAPQIGISLQIIAFEVTGHDIKLAMDKYGSKGISKMQMTLCPLTVLVNPKMKILDSRTTILRESCLSIENYSALVPRHQEIKVEGLNPDGQHIDLHASGWTARIIQHEMDHLQGNLYVDTMTYKSLRNEKW 212
            Q+GDPVLR +A PVE+A    PE + +   LV +MR+    G+ APQ+G+  Q++A E+     +    +   +  +  QM   PL V VNP +++LDSR     E C S+  + A VPR Q +++ GL+P+G+ +   ASGW ARIIQHEMDHLQG L++D M  ++  N  W
Sbjct:   69 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP----EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYW 238
The following BLAST results are available for this feature:
BLAST of TCONS_00010125-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DEFM2.851e-4741.38Peptide deformylase, mitochondrial OS=Homo sapiens... [more]
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