TCONS_00009816-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009816-protein
Unique NameTCONS_00009816-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009816-protein ID=TCONS_00009816-protein|Name=TCONS_00009816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MRECISIHLGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFN
TFFSETSSGKHVPRALFIDLEPTVVDEVRSGTYRRLFHPEQLISGKEDAA
NNYARGHYTVGKELIDVLVDRIRKTADKCTGLQGFLVFHSFGGGTGSGFT
SLLMERLSVEYGKKTKLEFAIYPAPQVSTAVVEPYNAILTTHTTLEHTDC
AFMVDNEAIYDICRANLSIDRPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLATYAPVISAERAYHEQLSVDEITTACFEPAN
QMVKCDPRHGKYMSCCLLYRGDVVPKDVNSAIAKIKTKRTIQFVDWCPTG
FKIGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGLDSQDSDEEEDDGD
EY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005491XLOC_005491Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009816TCONS_00009816Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR003008Tubulin_FtsZ_GTPase
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 418..438
NoneNo IPR availableGENE3D1.10.287.600coord: 384..435
e-value: 1.5E-31
score: 107.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..452
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 2..435
e-value: 0.0
score: 873.015
IPR000217TubulinPRINTSPR01161TUBULINcoord: 10..30
score: 65.85
coord: 153..174
score: 43.25
coord: 178..191
score: 69.24
coord: 380..408
score: 57.47
coord: 108..132
score: 52.7
coord: 134..152
score: 70.75
coord: 53..72
score: 61.82
coord: 95..106
score: 65.77
coord: 192..212
score: 59.43
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 120..128
score: 70.03
coord: 148..160
score: 76.41
coord: 360..379
score: 89.41
coord: 274..289
score: 79.15
coord: 214..226
score: 68.91
coord: 385..401
score: 83.89
coord: 161..172
score: 74.65
coord: 321..342
score: 82.81
coord: 88..101
score: 94.12
coord: 347..360
score: 90.52
coord: 45..58
score: 74.85
coord: 422..438
score: 88.28
coord: 18..33
score: 95.27
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 49..246
e-value: 2.9E-77
score: 272.7
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..213
e-value: 2.0E-67
score: 227.1
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..265
e-value: 6.6E-128
score: 425.2
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..244
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 248..393
e-value: 1.3E-56
score: 204.1
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 266..383
e-value: 9.0E-59
score: 196.3
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 263..391
e-value: 9.2E-51
score: 171.2
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 142..148
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 246..435

Blast
[Close]
BLAST of TCONS_00009816-protein vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 850.507 bits (2196), Expect = 0.000e+0
Identity = 408/452 (90.27%), Postives = 438/452 (96.90%), Query Frame = 0 
Query:    1 MRECISIHLGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETSSGKHVPRALFIDLEPTVVDEVRSGTYRRLFHPEQLISGKEDAANNYARGHYTVGKELIDVLVDRIRKTADKCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYGKKTKLEFAIYPAPQVSTAVVEPYNAILTTHTTLEHTDCAFMVDNEAIYDICRANLSIDRPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAERAYHEQLSVDEITTACFEPANQMVKCDPRHGKYMSCCLLYRGDVVPKDVNSAIAKIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGLDSQDSDEEEDDGDEY 452
            MRECISIH+GQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET +GKHVPRA+F+DLEPTV+DEVR+GTYR+LFHPEQLI+GKEDAANNYARGHYT+GKE+ID+++DRIRK AD+CTGLQGFLVFHSFGGGTGSGFTSLLMERLSV+YGKK+KLEF+IYPAPQVSTAVVEPYN+ILTTHTTLEH+DCAFMVDNEAIYDICR NL I+RPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAE+AYHEQL+V EIT ACFEPANQMVKCDPRHGKYM+CCLLYRGDVVPKDVN+AIA IKTKRTIQFVDWCPTGFK+GINYQPPTVVPGGDLAKVQRAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS D    ED+G+EY
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADG---EDEGEEY 449
The following BLAST results are available for this feature:
BLAST of TCONS_00009816-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+090.27Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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