TCONS_00009701-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009701-protein
Unique NameTCONS_00009701-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009701-protein ID=TCONS_00009701-protein|Name=TCONS_00009701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MTISSDCGDNSFELESYSSDCDSGHISLDDFPLSQEEIQEIYDELDLDEE
GITEDEITRRKRRIFVGGLKFASEDIVLHEYFQQFGKIKEAVVIKDRKVG
LSRGYGFVTMACDMSSLLAIMDKSPKLDGRRCNVNLAYIGQKKKPPSRKP
DLKLKDLSPLQGQFFPCNQNGGGYIVSPTVVTPNGYYQLGLPPLHGYQPV
YQIPQSPQPCYESDTTYYGPNSLPPASPMSPAMYPQQPIYYTQPLLISNH
PQGGSLATYPNQPYQPTTVGSPSDPNNNILNASSENLTLDANNNNNPVVA
QTTVVPSTYGMGTSQPPPQIPYSPVSSTTAVNPTDIATYTPSTYTDTARQ
VLNIKQTGQSNLLTQMPVVNNPLSTPGLSHPATGNLLINGTQLIQSGAHT
QLVSVPAHAQHNNGGGPPASPYATSPLTTTSIPNQNQIYAVHPHSGHHQP
QYIQQPREVVQI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005426XLOC_005426Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009701TCONS_00009701Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 63..135
e-value: 5.1E-15
score: 65.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 64..111
e-value: 8.0E-8
score: 31.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 62..139
score: 13.055
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 62..149
NoneNo IPR availableGENE3D3.30.70.330coord: 51..137
e-value: 2.3E-17
score: 62.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 408..427

Blast
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BLAST of TCONS_00009701-protein vs. Swiss-Prot (Human)
Match: RBM38 (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.339e-24
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 0 
Query:   63 RIFVGGLKFASEDIVLHEYFQQFGKIKEAVVIKDRKVGLSRGYGFVTMACDMSSLLAIMDKSPKLDGRRCNVNLAYIGQKKK 144
            +IFVGGL + + D  L +YF+ FG I+EAVVI DR+ G SRGYGFVTMA   ++  A  D +P +DGR+ NVNLAY+G K +
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 116
The following BLAST results are available for this feature:
BLAST of TCONS_00009701-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM387.339e-2454.88RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
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