TCONS_00009295-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00009295-protein
Unique Name	TCONS_00009295-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1023

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00009295-protein ID=TCONS_00009295-protein|Name=TCONS_00009295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1023bp
MVIHITLDIGCKQSGQLWTRKVTPEVEDGLVLNIKNVSSNGFTTRHIRFQ
HLAYDSSGDRIATSDHHGNIHVLDLQKNRYNLVYSCGIALTSIIWNNYRI
NEIVIALSNNEVRCYDIGKRSLLSILKGHTSPVDSLSIHGSGRYLLTSSF
DTTILWDLNTFTKKRTLNGAQEVGIQKVFFLPNSNHIVSCFQDDSIFVWD
CESMKCVYQLTVPPERKPAFKCLTATNDCRVLVGGGRSRFLYLWNMDNRQ
LIQVIELPDKVKSVKDIQFVTNVMALNQHQLLGVLAQDGVIRFIDTNNCS
LKAELGSTSKRIHSFLLSMNSQYIGLIMDNGEIALHHLPTVIKDKQTHKF
TVKKIASQTSSSNTIPSMNNNKHTKEKETESVTKENQPPRSTISYRKTQD
ASPQSRLNVGGISIKRLKTILQGFGEYPSKYRQLIWKNLLAIPENHTSFS
ALVDKGIHNAYIAIHERYPIKSQKLLRVLQRVLSALAHWSPIFGETEYLP
MLVFPFVKMFPNNQLVCFEFVVTILMNWCQRWFEYFPNPPLSILAMVETL
LSHHDPVLLKHFIDLDISTQLYAWPMLQTLYSEVLTRDDWLIVWDNVFSS
HPSFMLYFLVAYLIHSRKALLCTQTKENIKVFFHHQNPVDIAMVIKETYR
LSSSTPPDLDPKKSLDDRVPLPEGQYPIFDFYPKFVVNYLVEERERIREE
ELEYLRQKQLALDMKRQKELTQKEELAYYREQEQVVNAENERRQIIANEE
KRLASQRKKLQSLRRDIAMQELEMHDEVRRKFFHHQRQQKQMQLQRLDDE
MKRKFEQREVEMKDALTDAEIKAMQIKAQKLQLEEDLMREDVESSFRLQS
EREILRQHEEQSSRKMKRVIDKAYAVDAEKLKEYQTELGKVGQRRQNIQV
QADLAAQNKKWDMEREIQALQIARMNEENEQKENELHQTIRQSILHQREM
MDDEQTVRSEKNFNDQLPTTSDRVMRGHRVLARDEDDLSDRGSFTGRQMD
LMTQVRDLRTQMARKQKQLSVVD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005198	XLOC_005198	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00009295	TCONS_00009295	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR000195	Rab-GTPase-TBC_dom
IPR015943	WD40/YVTN_repeat-like_dom
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 910..942
None	No IPR available	COILS	Coil	Coil	coord: 787..807
None	No IPR available	COILS	Coil	Coil	coord: 746..773
None	No IPR available	COILS	Coil	Coil	coord: 690..710
None	No IPR available	COILS	Coil	Coil	coord: 816..841
None	No IPR available	GENE3D	3.40.50.300		coord: 536..764 e-value: 0.035 score: 13.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 355..406
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 119..157 e-value: 6.5E-5 score: 32.3 coord: 260..295 e-value: 240.0 score: 2.0 coord: 57..96 e-value: 31.0 score: 7.6 coord: 160..200 e-value: 0.013 score: 24.7 coord: 203..245 e-value: 19.0 score: 8.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 165..200 e-value: 0.17 score: 12.7 coord: 121..154 e-value: 0.01 score: 16.6
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 168..209 score: 8.604
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 126..154 score: 9.005
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 462..618 e-value: 7.3E-14 score: 51.8
IPR000195	Rab-GTPase-TBC domain	PROSITE	PS50086	TBC_RABGAP	coord: 426..601 score: 17.065
IPR000195	Rab-GTPase-TBC domain	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 544..651
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 38..218 e-value: 5.0E-30 score: 103.9 coord: 219..402 e-value: 1.4E-12 score: 46.6
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 187..201
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 126..254 score: 15.61
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 51..339

Blast

[Close]

BLAST of TCONS_00009295-protein vs. Swiss-Prot (Human)
Match: TBC31 (TBC1 domain family member 31 OS=Homo sapiens GN=TBC1D31 PE=1 SV=2)

HSP 1 Score: 798.89 bits (2062), Expect = 0.000e+0
Identity = 390/942 (41.40%), Postives = 622/942 (66.03%), Query Frame = 0

Query:    6 TLDIGCKQSGQLWTRKVTPEVEDGLVLNIKNVSSNGFTTRHIRFQHLAYDSSGDRIATSDHHGNIHVLDLQKNRYNLVYSCGIALTSIIWNNYRINEIVIALSNNEVRCYDIGKRSLLSILKGHTSPVDSLSIHGSGRYLLTSSFDTTILWDLNTFTKKRTLNGAQEVGIQKVFFLPNSNHIVSCFQDDSIFVWDCESMKCVYQLTVPPERKPA-FKCLTATNDCRVLVGGGRSRFLYLWNMDNRQLIQVIELPDKVKSVKDIQFVTNVMALNQHQLLGVLAQDGVIRFIDTNNCSLKAELGSTSKRIHSFLLSMNSQYIGLIMDNGEIALHHLPTVIKDKQTHKFTVKKIASQTSSSNTIPSMNNNKHTKEKETESVT--KENQPPRSTISYRKT----QDASP--QSRLN--VGGISIKRLKTILQGFGEYPSKYRQLIWKNLLAIPENHTSFSALVDKGIHNAYIAIHERYPIKSQKLLRVLQRVLSALAHWSPIFGETEYLPMLVFPFVKMFPNNQLVCFEFVVTILMNWCQRWFEYFPNPPLSILAMVETLLSHHDPVLLKHFIDLDISTQLYAWPMLQTLYSEVLTRDDWLIVWDNVFSSHPSFMLYFLVAYLIHSRKALLCTQTKENIKVFFHHQNPVDIAMVIKETYRLSSSTPPDLDPKKSLDDRVPLPEGQYPIFDFYPKFVVNYLVEERERIREEELEYLRQKQLALDMKRQKELTQKEELAYYREQEQVVNAENERRQIIANEEKRLASQRKKLQSLRRDIAMQELEMHDEVRRKFFHHQRQQKQMQLQRLDDEMKRKFEQREVEMKDALTDAEIKAMQIKAQKLQLEEDLMREDVESSFRLQSEREILRQHEEQSSRKMKRVIDKAYAVDAEKLKEYQTELGKVGQRRQNIQVQADLAAQNKKWDMEREIQALQIARMNEENEQKENEL 936
            + D+G K+SG++W RK +P   DG+++NI + +S+ +  + +RF ++A+D +GD +   DH GNI+V DL  NR+NLV     A T++ +N  R +E ++AL++  ++C+D   + L+S ++GH S V S+S+H SG+Y +T+S DT  LWDL+TF +KR LN  Q VGIQKVFFLP SN I+SCF+D+SIF W+C+++ C YQL  PPE     +K    T D R+L  GG+S  L+LW ++ RQL ++I++P KV++++ ++F+ +      +Q+LGVL+QDG++RFI+   C L  E+GS  + I S  +S + +YI  IM+NG + ++ +  + ++       + K+         I  +  NK +       VT  +  QP +S  S  +T    QD +   +S+ N    G++ KRL+ +L+G+GEYP+KYR  IW++LL +PENHT+FS L+DKG H A++ + ++YPIKS+KLLRVLQR LSALAHWS IF +T YLP+L FPFVK+F NNQL+CFE + T+++NWCQ WFEYFPNPP++IL+M+E +L+ HD  LL+HFID DI++QLYAWP+L+T++SEVLTR++WL ++DN+FS+HPSF+L  +VAY I SR  LL    K++ + FFHH+N +DI +VI++ Y L  +TP D+ P   L+  V L +GQYP+F+ YPKF+V+Y  +ERERIR +EL+YLR++Q   DM+ + +  + E+ A+Y++QE +  AE  RR+++  EE+++  QR++L +++R++ ++E+ + D  RR+F   Q+ Q++M+L+RLDDE+ RK   R+ E+     D E++ +++++QK   E++L       +  ++++ +  R+  +       ++I+       +  K  +  L K  Q   N   Q     + K  D++R     ++A++  EN +KE E+
Sbjct:    3 STDLGNKESGKIWHRKPSPATRDGIIVNIIHNTSD-YHPKVLRFLNVAFDGTGDCLIAGDHQGNIYVFDLHGNRFNLVQRTAQACTALAFNLRRKSEFLVALADYSIKCFDTVTKELVSWMRGHESSVFSISVHASGKYAITTSSDTAQLWDLDTFQRKRKLNIRQSVGIQKVFFLPLSNTILSCFKDNSIFAWECDTLFCKYQLPAPPESSSILYKVFAVTRDGRILAAGGKSNHLHLWCLEARQLFRIIQMPTKVRAIRHLEFLPDSFDAGSNQVLGVLSQDGIMRFINMQTCKLLFEIGSLDEGISSSAISPHGRYIASIMENGSLNIYSVQALTQEINKPPPPLVKV---------IEDLPKNKLSSSDLKMKVTSGRVQQPAKSRESKMQTRILKQDLTGDFESKKNELPDGLNKKRLQILLKGYGEYPTKYRMFIWRSLLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRTLSALAHWSVIFSDTPYLPLLAFPFVKLFQNNQLICFEVIATLIINWCQHWFEYFPNPPINILSMIENVLAFHDKELLQHFIDHDITSQLYAWPLLETVFSEVLTREEWLKLFDNIFSNHPSFLLMTVVAYNICSRTPLLSCNLKDDFEFFFHHRNNLDINVVIRQVYHLMETTPTDIHPDSMLNVFVALTKGQYPVFNQYPKFIVDYQTQERERIRNDELDYLRERQTVEDMQAKVDQQRVEDEAWYQKQELLRKAEETRREMLLQEEEKMIQQRQRLAAVKRELKVKEMHLQDAARRRFLKLQQDQQEMELRRLDDEIGRKVYMRDREIAATARDLEMRQLELESQKRLYEKNLTENQEALAKEMRADADAYRRKVDLEEHMFHKLIEAGETQSQKTQKVIKENLAKAEQACLNTDWQIQSLHKQKCDDLQRNKCYQEVAKLLRENRRKEIEI 934

The following BLAST results are available for this feature:

BLAST of TCONS_00009295-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00009295-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TBC31	0.000e+0	41.40	TBC1 domain family member 31 OS=Homo sapiens GN=TB...	[more]

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TCONS_00009295-protein (polypeptide) - C. hemisphaerica