TCONS_00009134-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00009134-protein
Unique Name	TCONS_00009134-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1229

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00009134-protein ID=TCONS_00009134-protein|Name=TCONS_00009134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1229bp
MEMDAMDTEDWPNDSSLENFTDPDISNMLQEDKTFQKLLADIENGEVVSG
ANMHMTNPNMVFGSVESFDHQSIISDSNSSLAGQYSPPFSSASPYGNQYS
PSTTSVDSGIPSEFADSPILSPETLSCYDYPSPITDEPNLNDLLMNRGQQ
PTSLDGNQISPQMLLKLIQQQVQQALIQQQQQQVQQGQAQQTALPSPIPN
QHSPVPNQQTSLSNQQTSLTNHQTALQQHLTQQTSQQASQLELQRNLQQQ
QVNNFLAQQHNSHLIDQTINGSKNDSQLRKMLTQTKNNITQTKNTIIHSL
QDKKEKIQRVFPKANTKPGKRKITSSSEDVKMENKVQALCAPQDNIMIPG
ALKEIPVSAESLEALLRQTKTVAPPKTTIQPPSTVNTNLIQMTTSNRTPQ
SVSQSSLPPLPRLVTATTPSVASNTSLNTSKISIEKQHKTHHHHSPHHHV
HSKAHNKAKKEAKRAAKVAEAKKSRVEHVIIEKRYRMKITDSLNELKIML
PGSDDKKATKNSILQAAIEEIKRLKKQNDTLRRRFDKMKGVFDELRNIGI
LSQSQMCISSSSSDSSVSDDCTTTSENTSSASDATNKSIEPEVNQDHYAS
PFQRQSAKDGAKVMTCFALFAFLIFNPLSLFAGGKGDTVNAPVFSSRHLL
GVRGEQDASPGFSLFSTLVNVFSSLFILMVMLLRGNPRCEKNSKLTQCFR
SQFRKAQKRINKGDYHDAKSSLRIALFVIGNSCPKTFHGMLASFAWKCVC
HMLYQLGILTALESIGNSILPAAVSCRNEKEQRQFAAKLSAKAYKKLHEI
ALKDSSSTYMESACYIMNAIYAAEVSNDKEALCTLYATAVVHMRERLWTW
LAPFPEYYFLACAHHASLASKDGVFAVDWIFENRGYAFFVSSIWDINRGT
VFNATDDESKLDANDLLQIVFVQFQEHLLSKALKRIIVPDTFYPNEGKIE
LRQRAISYLESLGTGPVSEQIDPVSLHYQSLYFWWGFTLKQLLNVCRDQR
IEDGEYKAMREMFEEIPLKHRNPLFTLAEGIISNYIYIRNMKYSIQIEGA
IPLDLKEQQLEIQEQLEASASMVDNLNEDMQGDGQPISSNKELEELIFIM
CCGLMIETNYLLWQYDSHAMGSEQELSCLINENHVLHSYAMKYPELAAKV
QAYDQEIQCMSGSDPSELSRMLKKTQHIKASSCQHNPISAFYMQNSNIPI
ETFAFGQCYKEGIMVCGKTYCILDMSKAR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005118	XLOC_005118	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00009134	TCONS_00009134	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 507..541
None	No IPR available	COILS	Coil	Coil	coord: 452..479
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 436..472
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 560..598
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 479..530 e-value: 2.9E-9 score: 46.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 475..524 e-value: 1.5E-10 score: 40.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	4.10.280.10		coord: 472..546 e-value: 1.7E-13 score: 49.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 473..524 score: 13.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 472..528 e-value: 3.545E-9 score: 53.7571
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 470..537

Blast

[Close]

BLAST of TCONS_00009134-protein vs. Swiss-Prot (Human)
Match: SRBP1 (Sterol regulatory element-binding protein 1 OS=Homo sapiens GN=SREBF1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.001e-22
Identity = 138/555 (24.86%), Postives = 235/555 (42.34%), Query Frame = 0

Query:  456 NKAKKEAKRAAKVAEAKKSRVEHVIIEKRYRMKITDSLNELKIMLPGSDDKKATKNSILQAAIEEIK-------RLKKQNDTLRRRFDKMKGVFDELRNIGILSQSQMCISSSSSDSSVSDDCTTTSENTSSASDATNKSI--------------EPE--VNQDHYASPFQRQSAK-----DGAKVMTCFALFAFLIFNPLSLFAGGKG-----DTVNAPVFSSRHLLGVRGEQDASPGFSLF-----STLVNVFSSLFILMVMLLRGNPRCEKNSKLTQCFRSQFRKAQKRINKGDYHDAKSSLRIALFVIGNSCPKTFHGMLASFAWKCVCHMLYQLGILTALESIGNSILPAAVSCRNEKEQRQFAAKLSAKAYKKLHEI-ALKDSSSTYMESACYIMNAIYAAEVSNDKEALCTL---YATAVVHMRERLWTWLAPFPEYYFLACAHHASLASKDGV-FAVDWIFENRGYAFFVSSIWDINRGTVFNATDDESKLDAN--DLLQIVFVQFQEHLLSKALKRIIVPDTFYPNEGKIELRQR---AISYLESL 962
            N+    +K  A      + R  H  IEKRYR  I D + ELK ++ G++  K  K+++L+ AI+ I+       +LK++N +LR    K K + D +   G    + + +    ++  V D  T    +  S   ++  S+              EP+  V +D  A P QR S       D +++  C  +F  L  NPL+   G +G     DT +      R++LG   E    PG++ +       L+N    L  L+++ + G P    +S     F    ++A   + +GD+  A   L +AL  +G   P +   +  S  W  + H+L +L +   L       L    + R +       A L    Y KLH++  +   +  ++ +    ++A+  AE + D  ++ TL   Y  A + ++  L   L  F   +FL+ A  A LA    V  A+ W+    G+ FFV   W +    +    +    L  N  D L  V   F+EHLL +AL  +  P+   P+ G  +  +    A+ YL+ L
Sbjct:  306 NRLAAGSKAPASAQSRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTE-AKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSLKDLVSACGSGGNTDVLMEGVKTE--VEDTLTPPPSDAGSPFQSSPLSLGSRGSGSGGSGSDSEPDSPVFEDSKAKPEQRPSLHSRGMLDRSRLALCTLVFLCLSCNPLASLLGARGLPSPSDTTSVYHSPGRNVLGT--ESRDGPGWAQWLLPPVVWLLNGLLVLVSLVLLFVYGEPVTRPHSGPAVYFWRHRKQADLDLARGDFAQAAQQLWLALRALGRPLPTSHLDLACSLLWNLIRHLLQRLWVGRWLAGRAGG-LQQDCALRVDASASARDAAL---VYHKLHQLHTMGKHTGGHLTATNLALSALNLAECAGDAVSVATLAEIYVAAALRVKTSLPRALH-FLTRFFLSSARQACLAQSGSVPPAMQWLCHPVGHRFFVDGDWSV----LSTPWESLYSLAGNPVDPLAQVTQLFREHLLERALNCVTQPN---PSPGSADGDKEFSDALGYLQLL 843

The following BLAST results are available for this feature:

BLAST of TCONS_00009134-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00009134-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SRBP1	1.001e-22	24.86	Sterol regulatory element-binding protein 1 OS=Hom...	[more]

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TCONS_00009134-protein (polypeptide) - C. hemisphaerica