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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00009000-protein ID=TCONS_00009000-protein|Name=TCONS_00009000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=5009bp
MLTTRRKKDLVLXRPSSEDHNANHKKKKGFGIVKKTLAINKKPSAIKHEK
RFGSSSTPGKRKSTTLSPSKRIATTDSSVFEFENEAIELCTSSEGKTVSS
SGKLTKAGQPRKRTTSSISSPTQDVSIRKKVKIQKKDVTIVKPKIKKIGF
GPKKPTVIKRDNRHGKNSGKNLRETSTKRKRKSHADTIQTTPTELSATED
SDTTLVDDLFTPVNQPLSLENCAETEAESQTTLDDEVWPVDVPLESQSED
LESPLVIESPSNENECTITAADTSLRDAWLKDFQNGIWNCIKTGCHERFS
QPLEYYKHLKECPPEKTKQLIFSSNIKVTCCFCQEAMIVQRFTRHARKHE
NVFKRISDGNLSCLHFGCDNVSKDGNDYILHYLECPVKLKDTQDEKEEER
TKGLMKKWLSKFKQGTFDCGNEKCNQTFNVPEKLVIHMENCRLGEINTRI
LKETVTCQWCKSNNLTLHEYAAHFKEEHFQIYLVLTQSKTPHKCPHFNCS
YEGDSARKYISHSIFCPPCILCEDCKCTFKSHTQWQEHDCILNDPIYFQR
ALNLWYSQVCSGFLRCPNVSCSSSFFIIEEFVSHLKECSTKSKFCKEVFE
RNKLKCSFCTAEFQMSEIQEHLSLEHSEIYMLLKKLHNKDGKVTCLNYKC
KTEFSDGIKYYHHASICKPLYQCSECRKEFSTKVSQVEHQCSAKDPRKKG
GDRRSGSFSPATDLVEWYQQLRSAIYFCPNSKCHKQFKTHESLIPHLGVC
KTDSKCLEVVKNNKFFCCICKMEVVLTQYGSHLKIHHSKIFHNLSRFDLT
HTVRCNYPCKQLFHDRGKYIRHAAVCSFSGTALGTNSPSTPVFNKTNWLN
NISNGNLYCPSRHCSENFFIIEHFLQHIRTCSTLITPVTKLPCLVCKNNY
MVDDLAQHFREKHVVVFAQVRLVARGICIHCPNELCNEPFANGIVYLQHV
ATXELCNEPFANGIVYLQHVATGCGATHSSSNSRKASSTGQATRSSSQTS
HEATPSSQASKSQIWYQDIMKGNLYCPNQRCLKEFVLPRDFIQHLRHCSD
GNETASLVFQRNELPCCFCKNYVSIGKYCTHLKSCHQEKAQEVSKGSQPT
SITNSSRSNNGRLISRKGWKRTTSICQSLISTETPSASNLHTNTSSFTQI
KASSTSSTSAATQHDANTANYSKNVDIAMESVDADSTPFQPTGRIHQSPE
HVDTTDDPIQEHEESAGVDTRIDDATRITEADSNVIPPQIDTDLQSKQXD
SNVIPPQMDTDLQSKQTSEQVIQSKDATDKDPSTFDDIVNLVQKLDQRIA
EPETTLIDTSNEGDENASPKVAIMDEEANSPNSILDPSTSISPKRTTRSQ
SRGSSTSKSPSSQQSKGTPTKCPVAKQEPTRLVEDELGALSPGKPQTPGS
KSPQQQESADPQDSPIDQRLSEKLREHSRGVTKRKLTDDSEVIDLVSQLI
KRKKKKTRFLHNVRPSTGQWTVTNLATATQQDDSSNTTIDEESSSVSDRL
SKNTSEEGMDTQPKEGTSVQTPSDQNVSKAEIENIIKSPPDGRYLRSKAG
PESTKLTSDLSHESEAILLGNLEKDKGGLEKSPKTTRVLRSKAIEDQTTG
STISIGIHPIEPPTEDVSANNEENEQSTAAKSPKAGRVLRDKTSKEISSE
SISSIEIQPTEETPRKDEETKAGKSPKADRVLRNKASKEMSSESIEIQPT
EETPRKDEETKAGKSPKADRVLRNKTSKEMSSELIEIQPTEETPRKDEET
KAGKSPKADRVLRNKTSKEMSSESIEIQPAEETPRKDEQTEAGKSSRSLR
SKTLKDIGKDPDKDCALVLDENPGEYSKQQVTPKKQDVKTSVAEETTPKT
TERVSRTNEKRTSIRKSYQFKTSDASDSTPQELPPSSHLEKGELETALGA
LKGSYHSPREDNTEAVPTKKQSTINTDKTLSNEQDNEKLTVPLKKNLRSS
SGKDVAKSETTTKSRRKSSRFKGDTENVRSTTEVVQKDKAPIAHDKIKSN
EKVEVKSAKVTSIRRSLRSSDIETPRTEKKDVSLEKNSVKKCAVVIPKRN
IRSKFSSSPPQSDKPESTTSVSSRKSTPSKSNDITPDKEVFERGTHAVST
KTGSSSKSIESVTTTKSDAVITRTENSLPSPKSSRLSLGEASSEESKTLS
GTDCTNSTNQHKSVLTLSGITSRRTSRSRKSQTSSIIDIKSSTTESDPSS
DERTKEVSRRMTQSTEPSITGDTSTQSEDTDSSVTYNSTTKSKNLGSPKR
KTQSRETTMKKDSDTDLNTTKRRTRSTDLSNLITSQPQDLKTEIFVKEVT
EPSTGTATSKVEKGEPIATSLNARKTKRRSRRLVKDDTPKKEEPINETDT
YVEETLLKETKVEKREESEIQKTILKEATETEALQENLDSEKKEKLETSK
QVDVKDQEHVSDYHENENKRESKHDGLPTNDPTVKETDESISHYNEIQKH
RHSKGQNQEEVKVDSPNETLAADRSNKDTDGKDEEEPTFQNEISKVNILN
DEVSKADCPEIKVASAEVSRVEDGDFEVLCQDSDETDISYPPSPIKSVEQ
GPLTAAEKRTHAQRDQPKQLPPTEALVSILDDRKEGPVSEVSGPTSTPGQ
ETVPMSRKPSTGSSSINPLLGMKNLIDATFSGMRDFLVSTPRDSPKPSES
PNPLRCLQENLDSLHQGRKVTSEAPQDKVMRGRRLESQSPLRRKIHKSPQ
ETLETLQDAPIMDRSENTQLKSQESSATYVSGIQEASETSQESCKTSQET
LQTPHQTSQSPIGKLQQASKTPLRHKQDISLRDTQDLIENATSTDSTDST
SSEKPKNIDDKASSTPVTEIPTADPQSSVKHNKTDSKTSSSPVTEEPTAI
STSSAKQKTDNKASSTLVTEIPAAVSTSSVKQKTDNKASSTLVTEIPAAV
STSSVKHKIDDKGSSTPVTEVPTADPQSSVKHKKTDNKARSTPVTEITNP
LTQTSEKSEHLNRNRNKKKQQNLPTTLNNEQGTSTPDKQPEPSTPGQLQT
KRKLGRFKYSRFSALNRMGGSPKDLDTATTSTPKKEETTETEIEKIKTPP
TISTTIRSNKINIESSVSETLDHQTADETINKELLPVQPSIEPVGLDDDE
DEEGAEIDFCIEPTGGHHSILNITSGHDSEVEIVDHDEDVVENDAASPND
AVDHSYEEEQVSEENTETCGDNDVSGGDNDVSGGDNDVISGDNDVISGDN
DVISGDNDVPCRDNKSEEREESKAIEIVGIQDETRAAIILDTESKKSKDE
PHTSQLQKIESDKHESEVREKDESSKEIRITTERRDETVSKETETIAEPR
REKTPKAPSENPTTIIDESVLSKEENDSQINRSVSPTFGPHRNRKQKRAE
EKTSSTLAMRQMLALAPTTFGDTTICPESQSEEETVPDSNLPSALVVKNG
VPTTKSLQQTFFNCVVEQAPPASDVSPTKEREETETIENELFDLFSGAQK
TVVETMSTFTVSETKTKTTELRSPKSKRRRTQTDHRPRKVSSESDHDLQA
QPEDYKTGKKRSQKVSRSRKGSKKDQNKVPKELTLIDGSIKENVPTATIE
MCETEYDIEEHKRKTRSSYVGPKIHEHLKSDIETGMQPSEDSKTKETLKH
GDVQMELHENDNQIQSEQTVLPSINEEKEPKSKTDQKKSKREKSKKTTEN
RSLRATATRRSFRSSVSIPESKESHESLNSGRCDQSRSTESVKTSTPQAD
KSKKELSSTEIKPKKSEELLKTKLNDKVERNDNNNRSNRKKRSELLPITK
PTEYPQTKLKEESVSYDVSLDIVRNLDEQLEMVIESDTNRVVEKGAVITN
ERESNILDTDTTCLDDEVFQPPLQEVNSDKILSDISDMISQGTESKDTGV
ITPDTSVVDESLKPADKSNDIGNKSKNQESPFEIWAKQLQNFQFVCPKCQ
VSFLRPSSLMKHIKSCVRNATPYCKVKVVCSECQISMRFERLGDHFKKRH
LLLNWYLGELEKGNWAICQNYKCGKYMDDPEDLRVHARKCQYLWKCKYCD
VEYDKESRVKNHHCRDTSSDEEDNVVDYPLPPGLSEKQPITIPDRTDKTK
KKRRSAVEDTDIHGNLETPPELGTPSIVNKKMKKKVSLVLPKLKIGSTVK
KKSGGTKPKASSTPAKSSVVGEEVEQVELVKEEIDFERWTTDLSNFNFCC
PVKECHKNNSVNGLRRHMLKIHSSELAQQAFXKNNSVNGLRRHMLKIHSS
ELTQQAFDCVIKCAVPTCNHHNIELKIDKYIKHVKASHPEVVQSYTDLHS
CYRSTVFCLNYECSKELSEFEEIGQHFISCGYKKICHECCHISESMQANK
EHICITEEFAEPEGDEKKADGKEKRGKRKSAARAMQILSAAIENVRKGKE
KKKSSDKEMYRIENELFGDDESDVEYDQDDSDFELDRVSSSSEEEIESDF
DEEEEEDEDDLNQVDEGSRRSRSRNEGTRLNYYDKEFFKTWVEESKTTDV
IHPTLMPREQDLKELSELQYTSYLPTVQTSPLIEFEYFKRSGQKKRTQAK
KLKLFEATPSLEDSGTLGFFCGGDVWSLDWCPSSGQGEQYMAVACHGSTI
EHHNPSERESSRGLIQIWYVGKIHQTSHSCKPKLVYGICHEYGPVYDLKW
CPANYEDYEMEEIKERLGILALACGDGSVRILSIPRPTNIGPGSQPVFCT
LDPVLTLLTHKNNAFETQRTGFCLCVRWHPLKPHRKIAAGFADGSVRIWD
VASQSMFLKIEEGNATSLLPIITMYPHSYAVRSIDWCPYNKDIIATVSCD
KSFKILHIQHPNNPLFVTKRGIFLDIVWPKTRLGLFVTEDECFNILPGSA
RYQVLENHFKLNLAEDHRRPVITTRHKTAAWSCSYNDYLDLVATSDTSGD
VIVCKDQDSQGTKYPKLQHKTEPVYHIDREEIEEIQSTPQEGGSHVLVDL
GQKHYDEDVNLCESYKKHQERNVKICCEKYKYTLVDTNKYEYTRYRSPKD
KDLNRCCFGHLKRVDDIPELETRSVHKVSWNMNYGSHTWLASGTRIGLVR
LHNFKAWKT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 2951..2971 |
| None | No IPR available | COILS | Coil | Coil | coord: 2374..2401 |
| None | No IPR available | GENE3D | 2.40.155.10 | | coord: 3875..4135
e-value: 7.5E-4
score: 19.1 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 765..786
e-value: 130.0
score: 3.5
coord: 328..349
e-value: 130.0
score: 3.3
coord: 288..310
e-value: 61.0
score: 6.3
coord: 3894..3914
e-value: 15.0
score: 11.8
coord: 726..748
e-value: 150.0
score: 2.9
coord: 4148..4172
e-value: 11.0
score: 12.8
coord: 492..514
e-value: 240.0
score: 1.1
coord: 604..626
e-value: 18.0
score: 11.0
coord: 3928..3950
e-value: 84.0
score: 5.1
coord: 3994..4013
e-value: 300.0
score: 0.2
coord: 455..478
e-value: 37.0
score: 8.2
coord: 1024..1047
e-value: 79.0
score: 5.3
coord: 671..691
e-value: 65.0
score: 6.1
coord: 891..913
e-value: 150.0
score: 3.0 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 3894..3922
score: 8.642 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40_4 | coord: 4650..4700
e-value: 0.0031
score: 26.7
coord: 4817..4855
e-value: 19.0
score: 8.9
coord: 4960..5003
e-value: 230.0
score: 2.1
coord: 4510..4554
e-value: 50.0
score: 6.3
coord: 4579..4633
e-value: 15.0
score: 9.6
coord: 4717..4757
e-value: 0.0096
score: 25.1 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 4687..4709
score: 8.938 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 4803..5009
e-value: 0.0025
score: 16.2
coord: 4385..4787
e-value: 7.1E-22
score: 77.2 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 4687..4701 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 4815..4876
coord: 4521..4775 |
Blast
BLAST of TCONS_00009000-protein vs. Swiss-Prot (Human)
Match: TF3C2 (General transcription factor 3C polypeptide 2 OS=Homo sapiens GN=GTF3C2 PE=1 SV=2) HSP 1 Score: 172.94 bits (437), Expect = 5.422e-43 Identity = 145/553 (26.22%), Postives = 234/553 (42.31%), Query Frame = 0
Query: 4465 LSELQYTSYLPTVQTSPLIEFEYFKRSGQKKRTQAKKLKLFEATPSLEDSGTLGFFCGGDVWSLDWCP-SSGQG-EQYMAVACHGSTIEHHNPSERESSRGLIQIWYVGKIHQTS-HSCKPKLVYGICHEYGPVYDLKWCPANYEDYEMEEIKERLGILALA----CGDGSVRILSIPRPTNI-----GPGSQPVFCTLDPVLTLLTHKNNAFETQRTGFCLCVRWHPLKPHRKIAAGFADGSVRIWDVASQSMFLKIEEGNAT-SLLPIITMYPHSYAVRSIDWCPYNKDIIATVSCDKSFKILHIQHPNNPLFVTKRGIFLDIVWPKTRLGLFVTEDECFNILPGSARYQVLENHFKLNLAEDHRRPVITTRHKTAAWSCSYNDYLDLVATSDTSGDVI--VCKDQDSQGTKYPKLQHKTEPVYHIDREEIEEIQSTPQEGGSHVLVDLGQKHYDEDVNLCESYKKHQERNVKICCEKYKYTLVDTNKYEYTRYRSPKDKDLNRCCFGHLKRVDDIPELETRSVHKVSWNMNYGSHTWLASGTRIGLVRLH 5002
LSEL+ YLP + SPL + R G + ++ F + + + + FF GG +W+LDWCP G G QY+A+ E H S+ S GL+Q+W +G + Q S + VYGI + G ++DLK+CP+ + K L C DG V + S+P P + +P + V TL A + G CL + W P +PH+ +AAG+ +G V W++ + S +I + + L P H AVR++ WC N + + D+ K ++ P P+ KR + ++ W G+ V +D C+ A Y + H+ ++ + T K WS S +D+L +A D SG++I + D + + P+Y D + Q +P EG H G + + E+ H + D + R P + R G + L+ ++HKV ++ N S+ WL SG + GLVR+H
Sbjct: 340 LSELEAAPYLPQEEKSPLFSVQ---REGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGAGASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGCIWDLKFCPSGAWELPGTPRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVKPAIYKVQCVATLQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINSIKRFLSTELAWLLPYNGVTVAQDNCY------ASYGLCGIHY-IDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTIAAGDISGELIAAILPDMALNPINVKRPVERRFPIYKAD---LIPYQDSP-EGPDHSSASSGVPNPPKARTYTETVNHHY----------LLFQDTDLGSFHDLLRREP----MLRMQEGEGHSQLCLDRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIH 864
The following BLAST results are available for this feature:
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