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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00008787-protein ID=TCONS_00008787-protein|Name=TCONS_00008787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1364bp
MNATWPNLKDTKTFKYQHFLGQHVIRLFKELKLIPLESDEFSDKLQICLK
KLVEFCKHVLSNKKAVQEYSSKKIISRCLSNIKHTSLELSKIIKNLSPLK
EIDKTSLESPQDLIDVTALTVETLIKVFYKHWNKESQLSQSSVHNMDKFW
NFLDKDEDTLSFDFNAFGLAGQGDETFYSPKSQKFIPLEGDYAHSFDTFN
TKPSFLDFYHTNKVSLVKHNSRMLLRSPKTHSVKDPIEIINNGTELIESA
HKVLLESQKKIYSESKLIHRGTLKSLRKDLNEALMSFDVSTTSLIENMSD
QSKKDEFMKCGSNLLDQMDSLNKFIEENKHIKSDSFQRGSSCPLSPSRSD
TSLGSSCISLSPRSTVSDSAIELASYDDDLRDYYSMSPGHPMNTLCFEEI
SKRVIEAATSKNSMLFEKVVNEITDFQEAMKNFIEDERKRNELQIISMPS
MEKAVKTSREFIRNCRSVYRSTSTSSNYTITSEQLEHLKAISRQWCKHQI
IFVDEMWRGLAPWTSMLEPIFALKKFHAAPSHLQNTLSNEWLGKFQELMQ
MITDVAGQFEYMNIKSPTKTKKKLSKSKLQYRSKSAPNLEEGEDSNDDSD
GEDYLEAVVRRSRSDVTDEQIKVHNLTVEMKQYFEKIVQLTKLYLLGDIE
VYEWMSFGLWLFRWANAVHNLMYHIDSSLLSYHGHAFTLKRITREQEKWK
SYGEKLKISIQDVDLISTIDCLMRETKINYDLFKEVFHHSTDPIDMKKAR
LILLVQQWKLKIEELAHHIKKGTNYLAKPLDTLIELSQPLTITGSFTSKK
FKQENSLEVYQDVFMRKMERVRLHTCLAVDKAGGRKAVHSIIEMLDNLED
SSDKIVNLCRNFKKERSTRQLTSKLFLLQIDWQSEGNNLLFSLRKLSDVK
YSAVSAVMRHLLTEKDMCNPHEFIEVIQQHDQGANEGCTKKKLDDIVHGD
SQRGAGVDRNNNRSLGLTEDDSIVYDTWIQDDVGAGIASSSKTNGEPVVV
ATDDVGEDDEDKEDENVDGEDETNVEEALKEWLYKDDETLKTRTLNSHHQ
TLQEGRQKPPLSPKPKNYRQIVEAKRSQFRKQHDALSRSQSRVEALSRSC
SRAEALSRSHSRVTDASLSFDSLPASRPDSRNDMHRSESRPKSLAAAARI
LQAEAEKWEEENNSIIKVAKLMADQMTQMADFHKGRNSRLKTKSDFVATA
KAIAANAKTISKFAAVVAQKCPDKSCQIDLLHYAELIPTMSTQLRIVASV
KSINVNDETTDAMLVINAGNLMKGVAGALKAAESASVKISTKQAYDGGNY
GDSDTEDVQQQSCDLAFQWKRKVRLKRAVDAICSPRDELGLRLSKETSLP
SLTDLVSYSSNTEL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006077 | Vinculin/catenin |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007155 | cell adhesion |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0051015 | actin filament binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007155 |
cell adhesion |
| molecular_function |
GO:0051015 |
actin filament binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1148..1168 |
| None | No IPR available | GENE3D | 1.20.1420.10 | | coord: 241..498
e-value: 0.19
score: 11.1 |
| None | No IPR available | GENE3D | 1.20.120.230 | | coord: 1128..1327
e-value: 7.9E-25
score: 86.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 572..602 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 987..1024 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1103..1142 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1046..1066 |
| IPR006077 | Vinculin/alpha-catenin | PFAM | PF01044 | Vinculin | coord: 1139..1293
e-value: 1.4E-36
score: 126.1 |
| IPR006077 | Vinculin/alpha-catenin | SUPERFAMILY | 47220 | alpha-catenin/vinculin-like | coord: 1144..1293 |
Blast
BLAST of TCONS_00008787-protein vs. Swiss-Prot (Human)
Match: VINC (Vinculin OS=Homo sapiens GN=VCL PE=1 SV=4) HSP 1 Score: 98.2117 bits (243), Expect = 1.764e-20 Identity = 62/162 (38.27%), Postives = 95/162 (58.64%), Query Frame = 0
Query: 1142 KSLAAAARILQAEAEKWEEENNSIIKVAKLMADQMTQMADFHKGRNSRLKTKSDFVATAKAIAANAKTISKFAAVVAQKCPDKSCQIDLLHYAELIPTMSTQLRIVASVKS-----INVNDETTDA---MLVINAGNLMKGVAGALKAAESASVKISTKQAY 1295
+ + AAA+ L EA KW + N II AK MA M +M+ +G + TK + AK IA + +++ A VA++C DK + +LL E IPT+STQL+I+++VK+ N++DE ++ MLV NA NLM+ V ++ AE+AS+KI T +
Sbjct: 964 QPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSG---TKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGF 1122
The following BLAST results are available for this feature:
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