TCONS_00008753-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008753-protein
Unique Name	TCONS_00008753-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	513

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008753-protein ID=TCONS_00008753-protein|Name=TCONS_00008753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MLAITSVCHGVIFFFRKYRMSSPLSNLKNKKRTPLKQGSRTAPFKPKEFH
EDDLLDQVYSTEGEKYKASHGVNRSSPVTNGDLMKSMMSRLTAAEKGLTE
AEQRNKEKDKKIRILEEKCEIYKKAQGYGSNQVLELERKCHKLQRQIHSM
ENFLEDYGMIWVGTNDSSDEDCFDNDGLNDEGDNEEPLWNPDSSIIEQCH
PQHQHKEFHMDYDLVLKNIGELNEIAGEGQHFIKHTKDGARLQVKESVPL
ILYANGIFMFGGPFRSFEEKTTQICMKDLMDGYFPSELQNTYPDGVPFTV
TDKRDKTYRDKRMEKLFPGQGYLLSPEKSSPTTRNSEDSKENDGKSNEIN
RVAMEENQREGPKYSTENFLSKLPSSVLKNGKIIDILGDLRESLQENNQS
TKHNVVVIETDVVRNMKSRLTNGRRSRPQTPSNITTLRIKSETGEETYVL
KMLYTQKIEDVRRFLNETRNTSDDDYDLKTSFPNQTYDESNKTLRDYGLT
PNATLHMVTRKTS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004908	XLOC_004908	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008753	TCONS_00008753	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012989	SEP_domain
IPR001012	UBX_dom
IPR000626	Ubiquitin_dom
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..153
None	No IPR available	COILS	Coil	Coil	coord: 84..125
None	No IPR available	GENE3D	3.10.20.90		coord: 308..509 e-value: 4.7E-17 score: 61.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..350
None	No IPR available	SUPERFAMILY	57997	Tropomyosin	coord: 84..154
IPR012989	SEP domain	PFAM	PF08059	SEP	coord: 250..321 e-value: 1.1E-16 score: 61.1
IPR012989	SEP domain	PROSITE	PS51399	SEP	coord: 245..309 score: 24.074
IPR012989	SEP domain	SUPERFAMILY	102848	NSFL1 (p97 ATPase) cofactor p47, SEP domain	coord: 239..327
IPR001012	UBX domain	PFAM	PF00789	UBX	coord: 432..507 e-value: 5.5E-9 score: 36.0
IPR001012	UBX domain	PROSITE	PS50033	UBX	coord: 430..507 score: 10.995
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 435..513 score: 9.678
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 411..508

Blast

[Close]

BLAST of TCONS_00008753-protein vs. Swiss-Prot (Human)
Match: UBX11 (UBX domain-containing protein 11 OS=Homo sapiens GN=UBXN11 PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 3.840e-69
Identity = 154/500 (30.80%), Postives = 250/500 (50.00%), Query Frame = 0

Query:   20 MSSPLSNLKNKKRTPLKQ-----GSRTAPFKPKEFHEDDLLDQVYSTEGEKYKASHG-----VNRSSPVT-NGDLMKSMMSRLTAAEKGLTEAEQRNKEKDKKIRILEEKCEIYKKAQGYGSNQVLE-LERKCHKLQRQIHSMENFLEDYGMIWVGTNDSSDEDCFDNDGLNDEGDNE----EPLWNPDSSIIEQCHPQHQHKEFHMDYDLVLKNIGELNEIAGEGQHFIKHTKDGARLQVKESVPLILYANGIFMFGGPFRSFEEKTTQICMKDLMDGYFPSELQNTYPDGVPFTVTDKRDKTYRDKRMEKLFPGQGYLLSPEKSSPTTRNSEDSKENDGKSNEINRVAMEENQREGPKYSTENFLSKLPSSVLKNGKIIDILGDLRESLQENNQ-STKHNVVVIETDVVRNMKSRLTNGRRSRPQTPS-NITTLRIKSETGEETYVLKMLYTQKIEDVRRFLNETRNTSDDDYDLKTSFPNQTYDESNKTLRDYGLTP 501
            MSSPL++L   ++ PL       G R       E   D L D   S E     + +G     V+R  P + + +LM  M  +L   E+ +         KD+KI  LE+  +  +      + Q  E LE  C +LQRQ+  ME FL DYG+ WVG  +  D++  ++  +++ G+ +    +  W P  S+              +D+D +L ++ +L+E+  EG   +     GARL+  E +PL LY NGI MF GPF+ F + +TQ C++D++DG+FPSELQ  YP+GVPF V+D R++ Y +  ++  FPG+G ++                        ++RV     +  G + + E FL++LP  V++ G++IDI G +R++LQ       +   +V+ET  +   + R     +  P TP+  ++ LRIKSE GE+ ++L M     I DVR  L + R      +++ ++FP   Y +   TL+  GL P
Sbjct:    1 MSSPLASLSKTRKVPLPSEPMNPGRRGIRIYGDEDEVDMLSDGCGSEEKISVPSCYGGIGAPVSRQVPASHDSELMAFMTRKLWDLEQQVKAQTDEILSKDQKIAALEDLVQTLRPHPAEATLQRQEELETMCVQLQRQVREMERFLSDYGLQWVG--EPMDQEDSESKTVSEHGERDWMTAKKFWKPGDSLAPP----------EVDFDRLLASLQDLSELVVEGDTQVTPVPGGARLRTLEPIPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNGVPFKVSDLRNQVYLEDGLDP-FPGEGRVVG----------------RQLMHKALDRV----EEHPGSRMTAEKFLNRLPKFVIRQGEVIDIRGPIRDTLQNCCPLPARIQEIVVETPTLAAERER----SQESPNTPAPPLSMLRIKSENGEQAFLLMMQPDNTIGDVRALLAQARVMDASAFEIFSTFPPTLYQDDTLTLQAAGLVP 463

The following BLAST results are available for this feature:

BLAST of TCONS_00008753-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008753-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UBX11	3.840e-69	30.80	UBX domain-containing protein 11 OS=Homo sapiens G...	[more]

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TCONS_00008753-protein (polypeptide) - C. hemisphaerica