TCONS_00008631-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008631-protein
Unique NameTCONS_00008631-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008631-protein ID=TCONS_00008631-protein|Name=TCONS_00008631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp
MESDSNILELIHSHLIESHLLQTARTLEKETGEKFATPELRLKHIVNTYQ
SLSELLSGLLPNVDNNIQNDAVATKTDEKATTKSDDTETASETKAITKKT
NSKTKTAKAKNKTVKEEPKKPLSVDKEDEPEKTAEDKIKSKNTKSKETKQ
TTKKKTVTDEKDKTEKSKDTLPKKEPAKRKVKPPPIPHEWLFPEMESVLS
QIFENLKNKDGTLTNKQFGTSSETKPKSEKMIKMTDKIDLDFEESDSNLP
KEAVEQVLIRLSNGDVYESPSGRKRESGAKEKKVEDKEKAKHEEQMESKP
FQKDILLIAEETSMVEEEDSNKSKSKKKKQKRNHDEVEEEPKEESEPKHS
IKKKKSKVSIEEEKQSVEQTRAEEQVVENGVVEAGDETIKPKKKKKKKNK
KKKNEDKDQDDTRTIDFRIDEKENDIEDSQNDFVTPRKKDLKTPMKKSTP
FQRVKEDLIQIDEKLTDNSYEAKKGSTNGYGEKANDVLKKTKGKSFRQEK
TKKKRGNYTGGTITTDVSSIYFSD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004831XLOC_004831Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008631TCONS_00008631Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007718SRP40_C
IPR006594LisH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 320..340
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 470..513
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 261..455
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..188
IPR007718SRP40, C-terminalPFAMPF05022SRP40_Ccoord: 450..522
e-value: 3.0E-26
score: 92.0
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 3..35
score: 8.962

Blast
[Close]
BLAST of TCONS_00008631-protein vs. Swiss-Prot (Human)
Match: NOLC1 (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.418e-23
Identity = 44/75 (58.67%), Postives = 62/75 (82.67%), Query Frame = 0 
Query:  448 STPFQRVKEDLIQIDEKLTDNSYEAKKGSTNGYGEKANDVLKKTKGKSFRQEKTKKKRGNYTGGTITTDVSSIYF 522
            S+PF+RV+E+ I++D ++ DNS++AK+G+   +GE+AN VLK TKGKSFR EKTKKKRG+Y GG+I+  V+SI F
Sbjct:  622 SSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKF 696
The following BLAST results are available for this feature:
BLAST of TCONS_00008631-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOLC11.418e-2358.67Nucleolar and coiled-body phosphoprotein 1 OS=Homo... [more]
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