TCONS_00008568-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008568-protein
Unique NameTCONS_00008568-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008568-protein ID=TCONS_00008568-protein|Name=TCONS_00008568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MSSLNNDVCGRCGKRVYHAEAKVGAQRSWHKVGCFTCNVCKCSLTSVTLA
ENNEENEIYCKSCYGRYHGPKGYGYGAGAGSLSMTGSDKSYVKYSGCLTA
AGKTYMGGNRCPRCSGSVYHAEEVLGAGLSWHKGCFNCKICNKKLDSTNC
QENDMEIYCKPCYGKHFGPKGYGFGGGAGALTNTGAYD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004796XLOC_004796Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008568TCONS_00008568Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 8..63
e-value: 9.7E-7
score: 38.4
coord: 110..162
e-value: 1.0E-13
score: 61.6
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 9..66
e-value: 4.6E-9
score: 36.3
coord: 111..166
e-value: 7.1E-12
score: 45.3
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 111..145
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 7..70
score: 11.197
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 109..169
score: 14.108
NoneNo IPR availableGENE3D2.10.110.10coord: 109..180
e-value: 6.4E-16
score: 58.0
NoneNo IPR availableGENE3D2.10.110.10coord: 4..93
e-value: 2.3E-12
score: 46.5
NoneNo IPR availableCDDcd09326LIM_CRP_likecoord: 9..64
e-value: 1.19117E-15
score: 66.8498
NoneNo IPR availableCDDcd09326LIM_CRP_likecoord: 111..163
e-value: 1.23657E-22
score: 85.7246
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 137..182
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 37..84
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 104..136
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 5..32

Blast
[Close]
BLAST of TCONS_00008568-protein vs. Swiss-Prot (Human)
Match: CSRP2 (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 1.779e-51
Identity = 90/186 (48.39%), Postives = 117/186 (62.90%), Query Frame = 0 
Query:    9 CGRCGKRVYHAEAKVGAQRSWHKVGCFTCNVCKCSLTSVTLAENNEENEIYCKSCYGRYHGPKGYGYGAGAGSLSMTGSDKSYVKYSGC----------LTAAGKTYMGGNRCPRCSGSVYHAEEVLGAGLSWHKGCFNCKICNKKLDSTNCQENDMEIYCKPCYGKHFGPKGYGFGGGAGALTNT 184
            CG CG+ VYHAE      RS+H+  CF C VC+ +L S T+A ++EE  IYCKSCYG+ +GPKGYGYG GAG+L+M   ++  +K               +   + Y G  +C RC  SVY AE+++GAG  WHK CF C  C K L+ST   E + EIYCK CY K+FGPKG+G+G GAGAL + 
Sbjct:   10 CGACGRTVYHAEEVQCDGRSFHRC-CFLCMVCRKNLDSTTVAIHDEE--IYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHA 192

HSP 2 Score: 90.5077 bits (223), Expect = 4.785e-23
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 0 
Query:  104 TYMGGNRCPRCSGSVYHAEEVLGAGLSWHKGCFNCKICNKKLDSTNCQENDMEIYCKPCYGKHFGPKGYGFGGGAGAL 181
             + GGN+C  C  +VYHAEEV   G S+H+ CF C +C K LDST    +D EIYCK CYGK +GPKGYG+G GAG L
Sbjct:    3 VWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTL 80
The following BLAST results are available for this feature:
BLAST of TCONS_00008568-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSRP21.779e-5148.39Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
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