TCONS_00008442-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008442-protein
Unique NameTCONS_00008442-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008442-protein ID=TCONS_00008442-protein|Name=TCONS_00008442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MSFDLNGKVALITGASSGIGKGTALYFAKNGARLAITGRKEDNLKEVAKE
CEEVNPNKEKVLTLVGDLSKEEDTERTFKETINHFNQLDILVNSAGIVMN
GTAESTSLQDYDLQMNINVRSIFHLTKLVIPHLIKVKGNIVNVSSITGLR
SFPGVSTYCMSKAAIDQYTRTTALELAPHQVRCNAVNPGVIVTQLHRRAG
MSEEDYQKFLIKCQSTHALGRAGNVDEVASVIAFLASDSASFVTGATIPV
DGGRHAMCPR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004727XLOC_004727Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008442TCONS_00008442Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 86..97
score: 50.8
coord: 158..177
score: 39.09
coord: 132..148
score: 35.23
coord: 179..196
score: 36.38
coord: 218..238
score: 39.59
coord: 9..26
score: 49.01
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00080SDRFAMILYcoord: 86..97
score: 51.19
coord: 138..146
score: 53.31
coord: 158..177
score: 36.97
NoneNo IPR availableGENE3D3.40.50.720coord: 1..51
e-value: 6.4E-14
score: 51.2
coord: 52..260
e-value: 2.4E-66
score: 223.3
NoneNo IPR availablePFAMPF13561adh_short_C2coord: 14..255
e-value: 4.5E-66
score: 222.7
NoneNo IPR availableCDDcd05364SDR_c11coord: 5..257
e-value: 4.1357E-135
score: 383.3
IPR020904Short-chain dehydrogenase/reductase, conserved sitePROSITEPS00061ADH_SHORTcoord: 145..173
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 6..257

Blast
[Close]
BLAST of TCONS_00008442-protein vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.908e-41
Identity = 87/258 (33.72%), Postives = 135/258 (52.33%), Query Frame = 0 
Query:    1 MSFDLNGKVALITGASSGIGKGTALYFAKNGARLAITGRKEDNLKEVAKECEEVNPNKEKVLTLVGDLSKEEDTERTFKETINHFNQLDILVNSAGIVMNGTAESTSLQDYDLQMNINVRSIFHLTKLVIPHLIK--VKGNIVNVSSITGLRSFPGVSTYCMSKAAIDQYTRTTALELAPHQVRCNAVNPGVIVTQLHRRAGMSEEDYQKFLIKCQSTHALGRAGNVDEVASVIAFLASDSASFVTGATIPVDGGRHA 256
            M   L G+  L+TGA  GIG+GT       GAR+    R + +L  + +EC  + P       +  DL   E TER     +     +D+LVN+A + +       + + +D    +N+R++  ++++V   LI   V G IVNVSS    R+    S YC +K A+D  T+  ALEL PH++R NAVNP V++T +  +A  S+    K ++   +   LG+   V+ V + I FL SD +   TG+T+PV+GG  A
Sbjct:    1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEP-------VCVDLGDWEATERA----LGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMG-QATWSDPHKAKTML---NRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFWA 243
The following BLAST results are available for this feature:
BLAST of TCONS_00008442-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCXR4.908e-4133.72L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
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