TCONS_00008431-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008431-protein
Unique Name	TCONS_00008431-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1276

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008431-protein ID=TCONS_00008431-protein|Name=TCONS_00008431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1276bp
MKGKGNSRRTFKKGDQCVQNPSTRRHRDDVKKNVISQRKSKGGLTLAALQ
KHNEDIEEDLHMEDLAISETTATTKKSKALSISGLTDCSNMTFNRVMDKW
KSTDSLDQEKCAVLAAVTEVIRSRGGSESETDYFAALMTLLESTTEEGSC
AAVLYLLSLVIKKVPTTVLRTKCAESLKCFTVIMEAHHENGRASLLMGLL
DCLATTLNAQDPAIWTEHSTQRSFQMMLMFIIHSKPKVRKVAHNSIQSIL
KLGLLNHKNHPSGSLTAKHLIQIFQQNSSDTATMCHHSLNFLKNCLHYFG
EKQLKELCEAILQLLSTNNPIMKTNSMQTLHSMFKSNPPEENLSADLNCK
LILALYDFQPSFNDVHVAEAWLAVQLEAHSNLSLLDNKLCLKHLTKFFGT
ALNFFQSDHMDVVKAAANYMKEASEKCMESYIDILEEDVTSNSSSFLKIL
KIMESGLTYKFQPVWNIVLQSLQYLYATYGRLFPNQMVYSVANVIQMYSG
PAAPFFNNLKKTIGAAFTSMGPKLILNDTPLELIKDSSDCQFPRAWLLPI
MKDSIKQTELQYFIDEFLPVAVHLKRRGEECRKNKEDLEAKVYETLLSQV
WSLLSGFCHKPTDVSTAFKNIAKVMGSALTDQKNLRQLVIQALRNLISTA
EEESTKFIGQFAKNYLPILFNLYTSDDEDCKGISLHVLEGIRSFLIVADE
KLVLMFLDKSLEKLDSEKSSLKKHQLMDLIVSMVKYCDDDHLNKLFKLML
THIDSKDRSMQKKSYRMLEEMLEANSESCKKQISVRFDEIKALLADSLSS
AKPSSKAPRLRCLSCLVKRLSRDQKDFLQAIIPEVILCTKEIGVKAKTAA
FELIVDIGTALVFLNDKPKEECIEEYFTLVMAGLAGSPHMISGTLLAFTK
MVFEYRYCLAEKLIGSLLEAAILLLKHKSSDVVKASLIFVRALVKILDAS
ELTGHLETMINNLFAWSATSKSAHRQQIRIILERLDKKCGYATIRPLVPE
EHRKFIVQIHKQMERNKRKKDDRKNADEGDDVIEQKENTWEDILAESADE
EEESVHKRPNKQRGGDKKDKKSSSGTKTWIMEGDETVDLMDPKIAQNIVG
TRPKLHARKRGGASAGFEMSSDGKFMIDNKTNDQTNNEDDITEKPLDIGQ
QDMLAGFDKTPKQLKAGKRKMLEDMPESEGGKFEYQPGGRGIHRDRDMDD
DDQPAPKRRFGGEYKAKKAGGDMKLKGKPDPYAYIPLDRQKLNKRKRAKL
TGQFNSMVKATKRGAAKSKQQKKHKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004722	XLOC_004722	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008431	TCONS_00008431	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR012978	Uncharacterised_NUC173
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 571..591
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1172..1276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1012..1079
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1105..1142
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 80..387 e-value: 3.7E-12 score: 44.8 coord: 388..990 e-value: 4.3E-24 score: 84.3
IPR012978	Uncharacterised domain NUC173	PFAM	PF08161	NUC173	coord: 448..649 e-value: 1.0E-57 score: 195.0
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 124..505 coord: 634..975 coord: 1006..1013

Blast

[Close]

BLAST of TCONS_00008431-protein vs. Swiss-Prot (Human)
Match: RRP12 (RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2)

HSP 1 Score: 754.977 bits (1948), Expect = 0.000e+0
Identity = 469/1294 (36.24%), Postives = 734/1294 (56.72%), Query Frame = 0

Query:    9 RTFKKGDQCVQNPSTRRHRDDVKKNVISQRKSKGGLTLAALQKHNEDIEEDLHMEDLAISETT-------ATTKKSKALSISGLTDCSNMTFNRVMDKWKSTDSLDQEKCAVLAAVTEVIRSRGGSESETDYFAALMTLLESTTEEGSCAAVLYLLSLVIKKVPTTVLRTKCAESLKCFTVIMEAHHENGRASLLMGLLDCLATTLNAQDPAIWTEHSTQRSFQMMLMFIIHSKPKVRKVAHNSIQSILKLGLLNHK----NHPSGSLTAKHLIQ-IFQQNSSDTATMCHHSLNFLKNCLHYFGEKQLKELCEAILQLLSTNNPIMKTNSMQTLHSMFKSNPPEENLSADLNCKLILALYDFQPSFNDVHVAEAWLAVQLEAHSNLSLLDNKLCLKHLTKFFGTALNFFQSDHMDVVKAAANYMKEASEKCMESYI-DILEEDVTSNSS----SFLKILKIMESGLTYKFQPVWNIVLQSLQYLYATYGRLFPNQMVYSVANVIQMYSGPAAPFFNNLKKTIGAAFTSMGPKLILNDTPLELIKDSSDCQFPRAWLLPIMKDSIKQTELQYFIDEFLPVAVHLKRRGEECRKNKEDLEAKVYETLLSQVWSLLSGFCHKPTDVSTAFKNIAKVMGSALTDQKNLRQLVIQALRNLISTA--EEESTKFIGQFAKNYLPILFNLYTSD--DEDCKGISLHVLEGIRSFLIVADEKLVLMFLDKSLEK-LDSEKSSLKKHQLMDLIVSMVKYCDDDHLNKLFKLMLTHIDSKDRSMQKKSYRMLEEMLEANSESCKKQISVRFDEIKALLADSLSSAKPSSKAPRLRCLSCLVKRLSRDQKDFLQAIIPEVILCTKEIGVKAKTAAFELIVDIGTALVFLNDKPKEECIEEYFTLVMAGLAGSPHMISGTLLAFTKMVFEYRYCLAEKLIGSLLEAAILLLKHKSSDVVKASLIFVRALVKILDASELTGHLETMINNLFAWSATSKSAHRQQIRIILERLDKKCGYATIRPLVPEEHRKFIVQIHKQMERNKRKKDDRKNA-------DEGDDVIEQKENTWEDILAESADEEEESVHKRPNKQRGGDKKDKKSSSGTKTWIME--GDETVDLMDPKIAQNIVGTRPKL-HARKRGGASAGFEMSSDGKFMIDNKTNDQTNNEDDIT----EKPLDIGQQDMLAGFDKTPKQLKAGKRKMLEDMPESEGGKFEYQPGGRGIHRDRDMDDDDQPAPKRRF-GGEYKAKKAGGDMKLKGKPDPYAYIPLDRQKLNKRKRAKLTGQFNSMVKATKRGA 1265
            + +KKG     NP+  RHR   +    S+   +  LT+ A++ HNE     L +      ET          T+KS    +SGL+DC+N+TF++V   W+S  +  +E CAVLAAVTEVIRS+GG E+ET+YFAALMT +E+     S AAV YLL+LV+K+VP+ VL  K +++ K F  IM A   +G  S+L  +L CLAT L  QD   W    T + +  +L F +H KPK+RK A + + S+LK      +    +HP+   TAK  IQ I +   S  AT   H L  LK+ L  F E  +K   E +L++++ ++ ++   +MQ  HS+F + P    LSA+LN ++I ALYD+ PS ND+    AWL V  +AH NL  L   L L HL +FFGTA+    S H  V+ AA   +KE  ++C+  ++ DI    VTS++S    S  K+ + +E GLTYKF   W+ VLQ L   +   GR     M   + ++  +   P  P    L + +GAA TSMGP+++L   PLE+        FPR+WLLP+++D +++T L +F   FLP+A  LK +  +  +    +E+K+Y+TL  Q+W+LL GFC +PTDV+ +FK +A+ +G A++++ +LR  V QALR LI+     E     + +FAKN+LPILFNLY       D       VLE IR++L + D +LV   L+K+ EK LD   S   +  ++DL+V++    D+  ++KL+  +  +++SK   +QKK+YR+LEE+  +        +    +++K  L DSL S    +K PRL+CL  +V++LS + K+F+ A+IPEVILCTKE+ V A+  AF L+V++G A +      +EE ++ Y  L+  GL G+  M+S ++LA T ++FE++  +    +  LLE   LLL  ++ DVVK++L F++  V ++D + L  H++ ++  +   S   +   R ++R +  +  +K G+  ++ L+PEE+ + +V I K   R KR +   + A       +E ++  + K ++ E+ILA+S DEE+    +R      G ++ K +   ++ W+ E  GDE ++ +DPK+AQ ++ T+P     RK+     GF++S+DG+ +I  + +     E++      E+  D  +  ++        + +    +   ++P       +YQ GG GIHR         P  K+   G EYKAKKA GD+K KG+PDPYAYIPL+R KLN+RK+ KL GQF  +VKA +RG+
Sbjct:   16 KRWKKGHSSDSNPAICRHRQAARSRFFSRPSGRSDLTVDAVKLHNELQSGSLRLGKSEAPETPMEEEAELVLTEKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESLAAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSAQASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHPKPKIRKAAQHGVCSVLKGSEFMFEKAPAHHPAAISTAKFCIQEIEKSGGSKEATTTLHMLTLLKDLLPCFPEGLVKSCSETLLRVMTLSHVLVTACAMQAFHSLFHARPGLSTLSAELNAQIITALYDYVPSENDLQPLLAWLKVMEKAHINLVRLQWDLGLGHLPRFFGTAVTCLLSPHSQVLTAATQSLKEILKECVAPHMADI--GSVTSSASGPAQSVAKMFRAVEEGLTYKFHAAWSSVLQLLCVFFEACGRQAHPVMRKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVQETRLGFFTTYFLPLANTLKSKAMDLAQAGSTVESKIYDTLQWQMWTLLPGFCTRPTDVAISFKGLARTLGMAISERPDLRVTVCQALRTLITKGCQAEADRAEVSRFAKNFLPILFNLYGQPVAAGDTPAPRRAVLETIRTYLTITDTQLVNSLLEKASEKVLDPASSDFTRLSVLDLVVALAPCADEAAISKLYSTIRPYLESKAHGVQKKAYRVLEEVCASPQGPGALFVQSHLEDLKKTLLDSLRSTSSPAKRPRLKCLLHIVRKLSAEHKEFITALIPEVILCTKEVSVGARKNAFALLVEMGHAFLRFGSN-QEEALQCYLVLIYPGLVGAVTMVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVTVMDVAHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVKRLLPEEYHRVLVNIRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILADSEDEEDNEEEERSR----GKEQRKLARQRSRAWLKEGGGDEPLNFLDPKVAQRVLATQPGPGRGRKK---DHGFKVSADGRLIIREEADGNKMEEEEGAKGEDEEMADPMEDVIIRNKKHQKLKHQKEAEEEELEIPP------QYQAGGSGIHR---------PVAKKAMPGAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRGS 1284

The following BLAST results are available for this feature:

BLAST of TCONS_00008431-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008431-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RRP12	0.000e+0	36.24	RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 S...	[more]

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TCONS_00008431-protein (polypeptide) - C. hemisphaerica