TCONS_00008426-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008426-protein
Unique Name	TCONS_00008426-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1136

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008426-protein ID=TCONS_00008426-protein|Name=TCONS_00008426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1136bp
MANVVAEMEKAAAILMAHPGLVTSEERQHAEQLFLEFRKTKQPYEICQSI
LKSCTVEYVIFEAATTLKEAVIREWSLLEKSEVEQLCGFLLQTVTEKVEF
PNFVREQILLAVAVIFKLGTLESPDARTNLINGLNELLTSGNKNMELICC
SIMKALLTEYSTTSQSTNFGMSLDFHAKCKKTFEEKDLLNLFILTINALQ
KYTSAPISSLGREDIAILNRYLSLAEQIFLWEFMSGNPLLLLRFPHLNET
ASKLIFKPHKNWKEMMLNPNLIDMFFQLLQVTSSHNELSHHCFQCLIQLA
SVAGGVFGTDDMQLKYLSHYMNCLLNVVDKHEWSAHQASGLASIIFRLVD
VFPMKIIRGISDDILNRLFEAMMFLTCMFLEKAATAPKDVLEDNEYAEGS
NTLLDAWITVISHSDDFPPDMFKKHSKVVVEAYIKCHLGAPEGIRPPDAI
DNEDLDHELSEKDRDFFSDELSNIGQFFRMNIRETVPLLKDKLNKRVDHL
QEYLNYERMRKSNSTNGNNRIASDVLFEDLNWLLLIATFVLTVDTTGESA
QVPNEIVDCSNDFLTSHQSCVASSVRYLTTIGKEGNVAEVDPCVGLFTSV
LRVVEIQNEFLNSNLVASYSPEIASTVLWFLKRWTRGYLPGYSAQLKNAP
VLSACFDVTKECGSLMLKVILETAELNLYCWTGEPDVTQDVSSLLLRIFH
DKKRVGIALALPTVWTIVKKFSSFDQKIMSLSPKVQRNIIEALMQACMQV
QDPKTKEEFQTQLLKPIMDNYLKVRQQDNFNRVSQNEEVKYTVIRTLECL
RGIFPTCFASFSDTLFQYFQPLIEDTVALILIYESYTVIIVAILEMYVDM
MEHVLCFLNSKNTTTLCRITIDMMKNYSKITKSIKKTDNDQEDEEQYNDL
LLLIQLLSHILSKDFLDLGDTKENEDSVSPVDIVLYGLQIVIPLITQELL
KYPKLSSEYFKLVTFVCEVYPEKLKVLPEELFKSFMASIQMAISDLNTEV
AKCSLDALSSLAKYLHNECDRNDPINLPLHNALLHFLNMVFEHIVLGHFN
MELIEPAAECFFLLICCHQEEYLKLANNLIAKQHVTNETFKQRLIDAFQL
LTPVGLQLSPNRQSLRQFRKNLETFLQNVKGFLCFK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004719	XLOC_004719	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008426	TCONS_00008426	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR014877	CRM1_C_dom
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 23..725 e-value: 2.2E-8 score: 32.4
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 726..1134 e-value: 2.0E-25 score: 89.0
IPR014877	CRM1 C-terminal domain	PFAM	PF08767	CRM1_C	coord: 939..1133 e-value: 1.7E-7 score: 30.6
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 267..336 coord: 617..640 coord: 399..520 coord: 7..212 coord: 685..828 coord: 895..1104

Blast

[Close]

BLAST of TCONS_00008426-protein vs. Swiss-Prot (Human)
Match: XPO4 (Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2)

HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 393/1158 (33.94%), Postives = 677/1158 (58.46%), Query Frame = 0

Query:    4 VVAEMEKAAAILMAHPGLVTSEERQHAEQLFLEFRKTKQPYEICQSILKSCTVEYVIFEAATTLKEAVIREWSLLEKSEVEQLCGFLLQTVTEKVEFPNFVREQILLAVAVIFKLGTLESPDARTNLINGLNELLTSGNKNMELICCSIMKALLTEYSTTSQSTNFGMSLDFHAKCKKTFEEKDLLNLFILTINALQKYTSAPISSLGREDIAILNRYLSLAEQIFLWEFMSGNPLLLLRFPHLNETASKLIFKPHKNWKEMMLNPNLIDMFFQLLQVTSSHNELSHHCFQCLIQLASVAGGVFGTDDMQLKYLSHYMNCLLNVVDKHEWSAHQASGLASIIFRLVDVFPMKIIRGISDDILNRLFEAMMFLTCMFLEKAATAPKDVLEDNE--YAEGSNTLLDAWITVISHSDDFPPDMFKKHSKVVVEAYIKCHLGAPEGIRPPD----AIDNEDLDHELSEKDRDFFSDELSNIGQFFRMNIRETVPLLKDKLNKRVDHLQ---EYLNYERMRKSNSTNGNNRIASDVLFEDLNWLLLIATFVLTVDTTGESAQVPNEIVDCSNDFLTSHQSCVASSVRYLTTIGKEGN----VAEVDPCVGLFTSVLRVVEIQNEFLNSNLVASYSPEIASTVLWFLKRWTRGYLPGYSAQLKNAPVL--SACFDVTKECGSLMLKVILETAELNLYCWTGEPDVTQDVSSLLLRIFHDKKRVGIALALPTVWTIVKKFSSFDQKIMSLSPKVQRNIIEALMQACMQVQDPKTKEEFQTQLLKPIMDNYLKVRQQDNFNRVSQNEEVKYTVIRTLECLRGIFPTCFASFSDTLFQYFQPLIEDTVALILIYESYTVIIVAILEMYVDMMEHVLCFLNSKNTTTLCRITIDMMKNYSKITKSIKKTDNDQEDEEQYNDLLLLIQLLSHILSKDFLDLGDTKE----------NEDSVSPVDIVLYGLQIVIPLITQELLKYPKLSSEYFKLVTFVCEVYPEKLKVLPEELFKSFMASIQMAISDLNTEVAKCSLDALSSLAKYLHNECDRNDPINLPLHNALLHFLNMVFEHIVLGHFNMELIEPAAECFFLLICCHQEEYLKLANNLIAKQHVTNETFKQRLIDAFQLLTPVGLQLSPNRQSLRQFRKNLETFLQNVKGFLCFK 1136
            V+A++E AA +LMA P +V +E+RQHAE +FL FRK+K P+ +C+ IL++  V+YV+F+AAT + EAV+REW LLEK  +E L  FLL  V ++     +VREQILLAVAVI K G+L+      ++ + +++L++SGN  ++ + CSI+ ALL+E+S++S+++N G+S++FH  CK+ F+E+DL  +F+LT+  LQ+++     +L  +  ++  RYL+LA Q+  W F+  N  L   +  + E++  ++ KP ++W+E +L+  ++++FF + +     ++++    QCL QLAS+ G +F  +  Q+ YL+H++  LLN ++  E    +A G++SII  L+ VFP  ++  I  ++ +     +  LTC F   AA   ++VL+ ++  Y E  + LL++W+T++     F    F +H+  V  +YI+CHL AP+G R       A   E+   EL E DRD FSD+L+++G   R+     +PLL   L +RV  L    +    + +    S+  +N++  D L+ED++WL+L+  ++L  DT GE+  +P EI++ S     S +  + ++++ L + G++ +        D  + L +++LRV E+++  + ++L    SP++   ++WFLKRW + YL     +L +   L  S  F    E    ++  +L+    NL  W+ E D+  D   LL+ +   ++R  + +     W + K+F+S    +  LS  VQR +++AL+       D +TK+++ T++L+P+   +L+V  Q+NF ++ Q EEVK  +  TLE L GI           LF +    + + + L+ +Y++    +  I+E++V++    +C+L       L    + +++ YSK     ++ D   E EEQY DLLL+++LL+++LSK+F+D  DT E             SVS  D+VLYG+ +++PL++Q+LLK+P L ++Y+KL+TF+CE++PEK+  LPE+LFKS M S+++ ++ +++EV +  L+AL+ LA+    +C +    + PL  A  HFL +VF+ +VL   N E+   A E F+ L+C HQ EY +L   L++ Q   +    QRL DAF  LT      + +R+    F K+LE F+ NV G LC K
Sbjct:   11 VIAQLENAAKVLMAPPSMVNNEQRQHAEHIFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKGSIESLRTFLLTYVLQRPNLQKYVREQILLAVAVIVKRGSLDKSIDCKSIFHEVSQLISSGNPTVQTLACSILTALLSEFSSSSKTSNIGLSMEFHGNCKRVFQEEDLRQIFMLTVEVLQEFSRR--ENLNAQMSSVFQRYLALANQVLSWNFLPPN--LGRHYIAMFESSQNVLLKPTESWRETLLDSRVMELFFTVHRKIREDSDMAQDSLQCLAQLASLHGPIFPDEGSQVDYLAHFIEGLLNTINGIEIEDSEAVGISSIISNLITVFPRNVLTAIPSELFSSFVNCLTHLTCSFGRSAAL--EEVLDKDDMVYMEAYDKLLESWLTLVQDDKHFHKGFFTQHAVQVFNSYIQCHLAAPDGTRNLTANGVASREEEEISELQEDDRDQFSDQLASVGMLGRIAAEHCIPLLTSLLEERVTRLHGQLQRHQQQLLASPGSSTVDNKMLDD-LYEDIHWLILVTGYLLADDTQGETPLIPPEIMEYS--IKHSSEVDINTTLQILGSPGEKASSIPGYNRTDSVIRLLSAILRVSEVESRAIRADLTHLLSPQMGKDIVWFLKRWAKTYLL-VDEKLYDQISLPFSTAFGADTEGSQWIIGYLLQKVISNLSVWSSEQDLANDTVQLLVTLVERRERANLVIQCENWWNLAKQFASRSPPLNFLSSPVQRTLMKALVLGGFAHMDTETKQQYWTEVLQPLQQRFLRVINQENFQQMCQQEEVKQEITATLEALCGIAEATQIDNVAILFNFLMDFLTNCIGLMEVYKNTPETVNLIIEVFVEVAHKQICYLGESKAMNLYEACLTLLQVYSKNNLGRQRIDVTAE-EEQYQDLLLIMELLTNLLSKEFIDFSDTDEVFRGHEPGQAANRSVSAADVVLYGVNLILPLMSQDLLKFPTLCNQYYKLITFICEIFPEKIPQLPEDLFKSLMYSLELGMTSMSSEVCQLCLEALTPLAE----QCAKAQETDSPLFLATRHFLKLVFDMLVLQKHNTEMTTAAGEAFYTLVCLHQAEYSELVETLLSSQQ--DPVIYQRLADAFNKLTASSTPPTLDRKQKMAFLKSLEEFMANVGGLLCVK 1151

The following BLAST results are available for this feature:

BLAST of TCONS_00008426-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008426-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
XPO4	0.000e+0	33.94	Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2	[more]

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TCONS_00008426-protein (polypeptide) - C. hemisphaerica