TCONS_00008301-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008301-protein
Unique NameTCONS_00008301-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008301-protein ID=TCONS_00008301-protein|Name=TCONS_00008301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MSLSRFANDADLRRAESIDEKTINRLELCKIHTCQRCGKSITDEFILRLS
TSSEWHTQCLNCENCGDNLSFLDSCYVRNGRPYCKQDYQRMFGKTCSGCN
VKLNENDFVMKIKSHVFHPECFRCIICNVILTSGDSFRFNLNGIVCKQHF
DAFQGKLNEDMKDPSIFDDDSNNFDHQQQPIKNGADKMKHENGVRKENVG
EHNGKSTVDACANETYKPTRIRTVLTDKQVAILKTCYTANPRPDALMKEQ
LVEMTGLSLRVIRVWFQNKRCKDKKKSVTITAKRKFVNSYDTVTLSTAAA
ANSSPYLPKRTENQILNNQWASVANQTYSRHGTIQNGSYQSYLINNGGLD
NGWYEKESGLQNMQHQTPSPSYSTHEELDLATKTSSSLKPSEFFQLINLP
NSSAEISKKHSPTFNANTPGDTSLYKSKQSAHSHISELGWSESEDDHTTH
SRPTATSASGFYTPFQTIA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004661XLOC_004661Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008301TCONS_00008301Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR001781Znf_LIM
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 218..280
e-value: 1.6E-18
score: 77.6
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 220..275
e-value: 3.8E-14
score: 52.2
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 216..276
score: 15.694
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 95..149
e-value: 2.4E-9
score: 47.0
coord: 33..87
e-value: 7.6E-10
score: 48.7
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 96..150
e-value: 1.3E-11
score: 44.4
coord: 34..92
e-value: 9.5E-14
score: 51.3
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 96..131
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 34..69
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 32..94
score: 13.83
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 95..156
score: 9.742
NoneNo IPR availableGENE3D2.10.110.10coord: 97..183
e-value: 1.4E-13
score: 50.4
NoneNo IPR availableGENE3D1.10.10.60coord: 210..286
e-value: 5.5E-18
score: 63.9
NoneNo IPR availableGENE3D2.10.110.10coord: 32..96
e-value: 1.6E-15
score: 56.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 405..469
NoneNo IPR availableCDDcd00086homeodomaincoord: 220..277
e-value: 1.31106E-15
score: 70.35
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 62..128
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 251..274
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 208..276

Blast
[Close]
BLAST of TCONS_00008301-protein vs. Swiss-Prot (Human)
Match: ISL1 (Insulin gene enhancer protein ISL-1 OS=Homo sapiens GN=ISL1 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 7.689e-70
Identity = 108/250 (43.20%), Postives = 150/250 (60.00%), Query Frame = 0 
Query:   31 IHTCQRCGKSITDEFILRLSTSSEWHTQCLNCENCGDNLSFLDSCYVRNGRPYCKQDYQRMFGKTCSGCNVKLNENDFVMKIKSHVFHPECFRCIICNVILTSGDSFRFNLNGIVCKQHFDAFQGKLNEDMKDPSIFDDDSNNFDHQQQPIKNGADKMKHENGVRKENVGEHNGKSTVDACANETYKPTRIRTVLTDKQVAILKTCYTANPRPDALMKEQLVEMTGLSLRVIRVWFQNKRCKDKKKSVTI 280
            I  C  CG  I D++ILR+S   EWH  CL C  C   L    +C+VR+G+ YCK+DY R++G  C+ C++  ++NDFVM+ +S V+H ECFRC+ C+  L  GD F    +G+ C+   D  +          S+   D  +  H  +P++  A+ +       + +V +   K+            TR+RTVL +KQ+  L+TCY ANPRPDALMKEQLVEMTGLS RVIRVWFQNKRCKDKK+S+ +
Sbjct:   14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERA--------SLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKT------------TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMM 243
The following BLAST results are available for this feature:
BLAST of TCONS_00008301-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ISL17.689e-7043.20Insulin gene enhancer protein ISL-1 OS=Homo sapien... [more]
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