TCONS_00008159-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008159-protein
Unique Name	TCONS_00008159-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	333

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008159-protein ID=TCONS_00008159-protein|Name=TCONS_00008159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MKTLCEAEEYIPKIPGQLVLNLLNIVFTVIAIFGNALIIVAILKSKQLRS
QTSIYFILSLALSDFLVGLVVQPLYSLVLIDWSYHTCQIHHYKFAIAFFT
CSVSIGNAFCVCFDRMLRITKPFHYENYVTKKRALLLCINMWCMGVAVGV
MVAQPETELLMAYGAPVEMLISFIICIYCAVQIYKVGQEQIERITKSNGS
DSKQRKKKQVLMERKLSSSLVSVLATIVICWGPFAIVNLIQQYTDDDSEQ
WILLFKVRLWTVLFGYSKSTINIFIFGLTHRDIKTAIRNILTLQDSKRSN
LELRPMNSVNSYGSTKQQWTPEMGKKNNALELP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004595	XLOC_004595	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008159	TCONS_00008159	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 53..74 score: 33.68 coord: 19..43 score: 23.32 coord: 258..284 score: 17.06 coord: 97..119 score: 20.77 coord: 216..240 score: 25.16
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 28..291 e-value: 6.4E-5 score: -36.9
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 34..272 e-value: 1.2E-27 score: 96.8
None	No IPR available	GENE3D	1.20.1070.10		coord: 2..331 e-value: 4.1E-44 score: 150.2
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 16..300
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 34..276 score: 23.1

Blast

[Close]

BLAST of TCONS_00008159-protein vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.027e-19
Identity = 95/363 (26.17%), Postives = 167/363 (46.01%), Query Frame = 0

Query:   23 LNIVFTVIA---IFGNALIIVAILKSKQLRSQTSIYFILSLALSDFLVGLVVQPLYS--LVLIDWSYHT--CQIHHYKFAIAFFTCSVSIGNAFCVCFDRMLRITKPFHYENYVTKKRALLLCINMWCMGVAVGVMVAQ------PETELLMAYG-------------APVEMLISF----IICIYCAVQIYKVGQEQIERITKSNG-----------SDSK-----QRKKKQVLMERKLSSSLVSVLATIVICWGPFAIVNLIQQYTDD--DSEQWILLFKVRLWTVLFGYSKSTINIFIFGLTHRDIKTAIRNILTLQDSKRSNLELRPMNSVNSYGSTKQQ--WTPEMGKKNNAL--ELP 333
            + IV ++I    +FGN L+I AI K ++L++ T+ YFI SLA +D ++GL V P  +  +++  W++    C+   +  +I     + SI     +  DR   IT PF Y++ +TK +A ++ + +W +      +  Q         E +  Y              A    ++SF    +I ++   ++++  + Q+++I KS G            D +     +R  K  L E K   +L  ++ T  +CW PF IVN++    D+    E +ILL  +       GY  S  N  I+     D + A + +L L   +RS+L+    N  +S G+T +Q  +  E  K+N  L  +LP
Sbjct:   36 MGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTN-YFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCE---FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWI-------GYVNSGFNPLIY-CRSPDFRIAFQELLCL---RRSSLKAYG-NGYSSNGNTGEQSGYHVEQEKENKLLCEDLP 382

The following BLAST results are available for this feature:

BLAST of TCONS_00008159-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008159-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADRB2	2.027e-19	26.17	Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB...	[more]

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TCONS_00008159-protein (polypeptide) - C. hemisphaerica