TCONS_00007736-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007736-protein
Unique Name	TCONS_00007736-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	564

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007736-protein ID=TCONS_00007736-protein|Name=TCONS_00007736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
AVTEDVKEFMQKRNNYPRLGKRNSELDTKWRKRIDLDYEVGSFNNAQFKK
CCLPLGHPFLKKIITLWNGEKYKPTGDFEKDFVELCTLVGIQSLCVVARP
KRPGTPSTTSTSITTGKGGKNAPPATQQPQQDANNNNINGDGPPTTYIIA
KNKYDYFKPRVEIETEEEANRIFVKELYIRGWRVEQKVIDVLAITMPELE
RLTLVDFWNAGLTDETVVTLGHCLSAAPSLKTLRLDGNSHASSQRFDIFL
SEKSMVQNLSLKNCCITDLGAQHIGNSLKDNRNLATLNLCFNKITDEGVS
HLAKGLRINRSLLSLNLGSNQISDDGAKHISEVLSTFQLTHEEIVQRRQL
RSTHIPDDGSSSPSQTSTSHDRPPTATRSFSKDDKKNNAKNKDKKKEPAN
KLKENGLKRGPSNVDSSTTSKQKTPKGKGGQKQDRGKTPQHEVEEVVEFK
NPLLENVREEDGALWIPGNKALINLNLARNSISEVGLEHLYEAVKYQSDM
SIESNKTSLGTGLMRLSLQRNKFLSMNPTYLKLVDLMKTRDPFYEPTPPS
PIEESSKEDHERKS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004387	XLOC_004387	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007736	TCONS_00007736	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 309..336 e-value: 1.6E-4 score: 31.0 coord: 469..496 e-value: 13.0 score: 9.4 coord: 253..280 e-value: 0.46 score: 19.5 coord: 281..308 e-value: 0.33 score: 20.0 coord: 196..226 e-value: 130.0 score: 2.2
None	No IPR available	GENE3D	3.40.50.2000		coord: 265..462 e-value: 5.1E-26 score: 91.2 coord: 463..538 e-value: 0.035 score: 13.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 541..564
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..443
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 175..332 coord: 465..496
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 164..264 e-value: 6.2E-7 score: 28.3
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 309..331 e-value: 5.6E-5 score: 22.8 coord: 254..274 e-value: 0.59 score: 10.2 coord: 281..303 e-value: 5.5E-4 score: 19.7

Blast

[Close]

BLAST of TCONS_00007736-protein vs. Swiss-Prot (Human)
Match: LRC71 (Leucine-rich repeat-containing protein 71 OS=Homo sapiens GN=LRRC71 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.350e-77
Identity = 179/511 (35.03%), Postives = 258/511 (50.49%), Query Frame = 0

Query:   70 EKYKPTGDFEKDFVELCTLVGIQSLCVVARPKRPGTPSTTSTSITTGKGGKNAPPATQQPQQDANNNNINGDGPPTTYIIAKNKYDYFKPRVEIETEEEANRIFVKELYIRGWRVEQKVIDVLAITMPELERLTLVDFWNAGLTDETVVTLGHCLSAAPS-LKTLRLDGNSHASSQRFDIFLSEKSMVQNLSLKNCCITDLGAQHIGNSLKD----NRNLATLNLCFNKITDEGVSHLAKGLRINRSLLSLNLGSNQISDDGAKHISEVLSTFQLTHEEIVQRRQL---RSTHIPDDGSSSPSQTSTSHDRPPTATRSFS------KDDKKNNAKNKD---KKKEPANKL--KENGLKRGPSNVDSSTTSKQKTPKGKG-----------------GQKQDRGKTPQHE-VEEVVEFKNPLLENVREEDGALWIPGNKALINLNLARNSISEVGLEHLYEAVKYQSDMSIESNKTSLGTGLMRLSLQRNKFLSMNPTYLKLVDLMKTRDPF 543
            E+Y+ +G  E DF ELCT  G      V    RP  P   S S++          AT    + + + ++N           ++KY +F+P +++E E+E ++  VKE+YIRGW+VE++++ V +  +P L +L  ++ W  GLTD+T+ T    L    S L+ + L+GN     Q +   ++  S + +LSL+N  I D GAQ +G +L      NR L +LNL FN I DEG  ++A GLR+NRSLL L+L  N+I D GA  ++EVL  F+LTH E+V+RR+L   + T       SS     +  DR  +     S      K DK    K      KKKE + +L  KE  L  G S    +   +  T  GKG                 G ++ R    + E V E  E  NPLLE V   DG +++PGNK L++LNL RN I+EVGLE     V+YQ   S   + +    GL+ LSL +N F    P Y  + +LM  RDP 
Sbjct:   54 EEYQCSGVLETDFAELCTRWGYTDFPKVVNRPRPHPPFVPSASLSEK--------ATLDDPRLSGSCSLNS---------LESKYVFFRPTIQVELEQEDSK-SVKEIYIRGWKVEERILGVFSKCLPPLTQLQAINLWKVGLTDKTLTTFIELLPLCSSTLRKVSLEGNP-LPEQSYHKLMALDSTIAHLSLRNNNIDDRGAQLLGQALSTLHSCNRTLVSLNLGFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRAFELTHTEVVERRRLLLEKGTQERSRSPSSSRHGDSKTDREKSQMVGISNSALVDKTDKTQTMKTPKGLGKKKEKSWELAKKEEKLGSGQSPTQGTPKKEDATKAGKGKVTIPEQKPSRAKGIKIGSREKRSILLESELVVEATEVVNPLLEPVEHRDGKVFMPGNKVLLHLNLIRNRITEVGLEGFLATVQYQMQFSKAKSASKGPVGLLWLSLAKNCFAPQCPAYAIIQELMLPRDPI 545

The following BLAST results are available for this feature:

BLAST of TCONS_00007736-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007736-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LRC71	3.350e-77	35.03	Leucine-rich repeat-containing protein 71 OS=Homo ...	[more]

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TCONS_00007736-protein (polypeptide) - C. hemisphaerica