TCONS_00007546-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007546-protein
Unique NameTCONS_00007546-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length111

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007546-protein ID=TCONS_00007546-protein|Name=TCONS_00007546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MFLFFQDSPEFARIIAMVDPNGSGYITFQAFLDFMTREMADTDTADQVME
SFRILAGDKPYITADELRRELPGEQAEYCIARMSPYAGPDAVPGALDYRS
FSSALYGESDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004267XLOC_004267Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007546TCONS_00007546Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR014837EF-hand_Ca_insen
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 10..38
e-value: 3.3E-5
score: 33.3
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 10..37
e-value: 2.1E-6
score: 26.7
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 6..41
score: 11.919
NoneNo IPR availableSMARTSM01184efhand_Ca_insen_2coord: 41..107
e-value: 2.1E-39
score: 146.9
NoneNo IPR availableGENE3D1.10.238.10coord: 3..47
e-value: 6.2E-10
score: 38.3
NoneNo IPR availableGENE3D1.10.238.10coord: 48..111
e-value: 0.027
score: 14.0
IPR014837EF-hand, Ca insensitivePFAMPF08726EFhand_Ca_insencoord: 41..107
e-value: 4.2E-28
score: 97.1
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 7..55
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 39..110

Blast
[Close]
BLAST of TCONS_00007546-protein vs. Swiss-Prot (Human)
Match: ACTN1 (Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 9.971e-54
Identity = 82/106 (77.36%), Postives = 93/106 (87.74%), Query Frame = 0 
Query:    6 QDSPEFARIIAMVDPNGSGYITFQAFLDFMTREMADTDTADQVMESFRILAGDKPYITADELRRELPGEQAEYCIARMSPYAGPDAVPGALDYRSFSSALYGESDL 111
            Q   EFARI+++VDPN  G +TFQAF+DFM+RE ADTDTADQVM SF+ILAGDK YIT DELRRELP +QAEYCIARM+PY GPD+VPGALDY SFS+ALYGESDL
Sbjct:  787 QGEAEFARIMSIVDPNRLGVVTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITMDELRRELPPDQAEYCIARMAPYTGPDSVPGALDYMSFSTALYGESDL 892
The following BLAST results are available for this feature:
BLAST of TCONS_00007546-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACTN19.971e-5477.36Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2[more]
back to top