TCONS_00007484-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007484-protein
Unique NameTCONS_00007484-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007484-protein ID=TCONS_00007484-protein|Name=TCONS_00007484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MPFFGSSKKKEVAPSTQDAIQRLRSTEEMLSKKSDFLEKKITQELMTAKK
HGTKDKRVALNALKRKKRLEKQLQQIDGTLSKIEMQREALENANTNTEVL
NTMGYAAKALKNAHQQLDVDDVHDLMDDISEQTEVANEISDAISTNVGFG
DDIDEDELEAELEELEQEDLDEAMLGIDKTPVIPDAGLEDLPSVPTATPA
SKKPAAAADDDDMAQLAAWAS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004220XLOC_004220Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007484TCONS_00007484Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..100
NoneNo IPR availableCOILSCoilCoilcoord: 153..173
NoneNo IPR availableCOILSCoilCoilcoord: 20..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..211
IPR005024Snf7 familyPFAMPF03357Snf7coord: 19..198
e-value: 3.1E-53
score: 179.8

Blast
[Close]
BLAST of TCONS_00007484-protein vs. Swiss-Prot (Human)
Match: CHM4B (Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.389e-72
Identity = 133/209 (63.64%), Postives = 155/209 (74.16%), Query Frame = 0 
Query:   14 PSTQDAIQRLRSTEEMLSKKSDFLEKKITQELMTAKKHGTKDKRVALNALKRKKRLEKQLQQIDGTLSKIEMQREALENANTNTEVLNTMGYAAKALKNAHQQLDVDDVHDLMDDISEQTEVANEISDAISTNVGFGDDIDEDELEAELEELEQEDLDEAMLGIDKTPVIPDAGLEDLPSVPT-ATPASKKPAAAADDDDMAQLAAWAS 221
            P+ Q+AIQRLR TEEMLSKK +FLEKKI QEL  AKKHGTK+KR AL ALKRKKR EKQL QIDGTLS IE QREALENANTNTEVL  MGYAAKA+K AH  +D+D V +LM DI++Q E+A EIS AIS  VGFG++ DEDEL AELEELEQE+LD+ +L I     +P      LP+VP+ A P+        +DDDM +L  WA 
Sbjct:   20 PTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVP------LPNVPSIALPSKPAKKKEEEDDDMKELENWAG 222
The following BLAST results are available for this feature:
BLAST of TCONS_00007484-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM4B2.389e-7263.64Charged multivesicular body protein 4b OS=Homo sap... [more]
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